PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2539s0002.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 24662.7 Da PI: 6.2366 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 58.2 | 1.5e-18 | 34 | 85 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ L +++P++ ++++K +Ka+ L +++eYI+ Lq Cagra.2539s0002.2.p 34 RSKHSETEQRRRSKINERFQSLMDIIPQN--QNDQKRDKASFLLEVIEYIHFLQ 85 899*************************6..4********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 8.8E-21 | 30 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.29E-18 | 30 | 89 | No hit | No description |
SuperFamily | SSF47459 | 1.2E-19 | 30 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.015 | 32 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-16 | 34 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.7E-14 | 38 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MNPDLDEQLD GDVYNNLPSR NDSSTGRRNR SSGRSKHSET EQRRRSKINE RFQSLMDIIP 60 QNQNDQKRDK ASFLLEVIEY IHFLQEKVQM YEGSPQLWCQ TPTKLIPWRN SHGSVVEIGD 120 HPQIVSSYDK VAASSGLLLD MQNSLDSDID SAVSTKILEH SPTSAVSCYV PTEPLPQFVQ 180 HDFWQPKPSC GLITCNTCRK KDFVCSLINP LPLIGSVS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00534 | DAP | Transfer from AT5G38860 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2539s0002.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ630499 | 1e-167 | AJ630499.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At5g38860. | |||
GenBank | BT033131 | 1e-167 | BT033131.1 Arabidopsis thaliana unknown protein (At5g38860) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285112.2 | 1e-140 | transcription factor BIM3 | ||||
Swissprot | Q9FMB6 | 1e-112 | BIM3_ARATH; Transcription factor BIM3 | ||||
TrEMBL | R0H0C0 | 1e-139 | R0H0C0_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.2539s0002.1.p | 1e-151 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38860.1 | 1e-101 | BES1-interacting Myc-like protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2539s0002.2.p |
Publications ? help Back to Top | |||
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