PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2519s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 253aa MW: 28069.5 Da PI: 4.9166 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3e-15 | 31 | 75 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eEd+ +++++++ G++ W++Ia+ + gRt++++k++w++ Cagra.2519s0060.1.p 31 RGEFSPEEDDTIIKLHALKGNK-WAAIAASLA-GRTDNEIKNYWNTN 75 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 11 | 38 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.77E-21 | 11 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.101 | 12 | 25 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 24.692 | 26 | 80 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-16 | 30 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 31 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-11 | 33 | 76 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-21 | 39 | 77 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000162 | Biological Process | tryptophan biosynthetic process | ||||
GO:0002213 | Biological Process | defense response to insect | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009759 | Biological Process | indole glucosinolate biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MCVQCIYIGL KRCGKSCRLR WANYLRPDIK RGEFSPEEDD TIIKLHALKG NKWAAIAASL 60 AGRTDNEIKN YWNTNLKKRI KQKKGLDPIP ITHKSINSST GQNAIEPINN NKPVRSSGSA 120 RLLNRVASKY AAEFNRDLLT GLISGNRTVF GDSQNPSGEI DPRDSTLLNK VAETSVYINS 180 STLSDISDNC FNEFLSNEEI SDDFMYTTID NIEFMEELKG ILSGSGAEVV ENSSDEVNAA 240 DDMEFIIGCW NE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-19 | 12 | 80 | 40 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 83 | LKKRIKQKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2519s0060.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006281446.1 | 1e-173 | transcription factor MYB34 | ||||
Swissprot | O64399 | 1e-105 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | R0GCF4 | 1e-171 | R0GCF4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2519s0060.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9331 | 16 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60890.1 | 1e-107 | myb domain protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2519s0060.1.p |