PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2481s0016.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 390aa MW: 42390.1 Da PI: 9.7428 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.5 | 3.4e-14 | 310 | 362 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+k+ e+ k+ Cagra.2481s0016.1.p 310 RRQKRMIKNRESAARSRARKQAYTLELEAEIESLKQLNQDLQKKQAEIMKTQN 362 79***************************************987766665433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-12 | 306 | 370 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.496 | 308 | 359 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.5E-12 | 310 | 367 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.1E-13 | 310 | 367 | No hit | No description |
CDD | cd14707 | 2.17E-23 | 310 | 361 | No hit | No description |
SuperFamily | SSF57959 | 4.81E-10 | 310 | 359 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 313 | 328 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MGTRINFDNL GGDSSGGNGC NTNQSKPLAR QSSLYSLTFD ELQSTLGEPG KDFGSMNMDE 60 LLKNIWSAEE TQAFMTTPSS VAASGPSGYV PGGNGLQRQG SLTLPRTLSQ KTVDEVWKHL 120 NSKDGDNGNN RTDVPERQQT LGEMTLEDFL LRAGVVKEDN NSTQQKDNSS GFYANNGAAG 180 LGFGFGQLNQ NSISFNSNNN SMLLNQAPGL GLEVGGTMQQ PHQRQQQQPH QRLPPTIFPK 240 QANVTFAPVN MVNRGLDGPV NSNLGGGGVT VAATSPGTSS AENNTWSSPV PYVFGRGRRS 300 NTGLEKVVER RQKRMIKNRE SAARSRARKQ AYTLELEAEI ESLKQLNQDL QKKQAEIMKT 360 QNSELKESAK QPPWLAKTQC LRRTLTGPW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00087 | SELEX | Transfer from AT1G49720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2481s0016.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF093544 | 0.0 | AF093544.1 Arabidopsis thaliana clone 1 abscisic acid responsive elements-binding factor (ABRE) mRNA, complete cds. | |||
GenBank | AK226983 | 0.0 | AK226983.1 Arabidopsis thaliana mRNA for abscisic acid responsive elements-binding factor, complete cds, clone: RAFL09-41-C22. | |||
GenBank | BT008575 | 0.0 | BT008575.1 Arabidopsis thaliana clone U19471 putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds. | |||
GenBank | BT008647 | 0.0 | BT008647.1 Arabidopsis thaliana clone RAFL09-77-C02 (R19471) putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305034.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 4 isoform X1 | ||||
Swissprot | Q9M7Q5 | 0.0 | AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4 | ||||
TrEMBL | R0GPT8 | 0.0 | R0GPT8_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2481s0016.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM734 | 27 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49720.1 | 0.0 | abscisic acid responsive element-binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2481s0016.1.p |
Publications ? help Back to Top | |||
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