PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2248s0023.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 432aa    MW: 46711 Da    PI: 7.7154
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2248s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08106128326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          ++lC+f+   G C+yGd+C++ H+
  Cagra.2248s0023.1.p 106 EKLCKFWVD-GNCPYGDKCRYLHC 128
                          579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.852652IPR000571Zinc finger, CCCH-type
SMARTSM003560.0852851IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-6103127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685103130IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-6105129IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-6106128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-7107125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.7E-17126240IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.19E-45134424IPR017986WD40-repeat-containing domain
SMARTSM003202.1E-6134173IPR001680WD40 repeat
PfamPF004003.2E-5137173IPR001680WD40 repeat
PROSITE profilePS5008213.717141182IPR001680WD40 repeat
PROSITE profilePS5029421.937141343IPR017986WD40-repeat-containing domain
PRINTSPR003203.2E-6160174IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780160174IPR019775WD40 repeat, conserved site
SMARTSM003201.7213250IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.4E-31241424IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.1257294IPR001680WD40 repeat
PROSITE profilePS5008211.678264303IPR001680WD40 repeat
PRINTSPR003203.2E-6281295IPR020472G-protein beta WD-40 repeat
SMARTSM003203.5E-4297334IPR001680WD40 repeat
PfamPF004000.0045299333IPR001680WD40 repeat
PRINTSPR003203.2E-6321335IPR020472G-protein beta WD-40 repeat
SMARTSM0032014338381IPR001680WD40 repeat
SMARTSM003206.9384421IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDLDMNGGNK RVFQRLGGGS NRPPTDSNQK VCFHWRAGRC NRYPCPYLHR ELPGPGPVAA  60
SSSSTNKRVA DESGFAGPSH RRGPGFSGSA NNWGRFGGNR TVTKTEKLCK FWVDGNCPYG  120
DKCRYLHCWS KGDSFSLLTQ LDGHQKVVTG IALPSGSDKL YTGSKDETVR IWDCASGQCT  180
GVLNLGGEVG CMISEGPWLL VGMPNLVKAW NIQNNADLSL TGPVGQVYSL VVGTDLLFAG  240
TQDGSILVWK YNSTTSCFDP AASLKGHTLA VVSLYVGANR LYSGAMDNSI KVWSLENLQC  300
IQTLTEHTSV VMSLICWEQF LLSCSLDNTV KIWAATEGGN LEVTYTHKEE YGVLALCGVH  360
DAEAKPVLLC SCNDNSLHLY DLPSFTGRGK ILAKQEIRSI QIGPGGIFFT GDGSGQVKVW  420
KWSTEPTAIM S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-211384248323Tako8
6g6n_A1e-211384248323Tako8
6g6n_B1e-211384248323Tako8
6g6n_C1e-211384248323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2248s0023.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520630.0AJ252063.1 Arabidopsis thaliana partial mRNA for zfwd1 protein (zfwd1 gene).
GenBankBT0261220.0BT026122.1 Arabidopsis thaliana.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283770.10.0zinc finger CCCH domain-containing protein 48
RefseqXP_023635451.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLR0GZR90.0R0GZR9_9BRAS; Uncharacterized protein
STRINGCagra.2248s0023.1.p0.0(Capsella grandiflora)
STRINGXP_006283770.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1