PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2235s0034.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 384aa    MW: 43055.1 Da    PI: 8.3884
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2235s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.23.1e-27191243255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           r++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gL++e+v+SHLQk+Rl
  Cagra.2235s0034.1.p 191 SRVVWSIELHQQFVNAVNQL-GIDKAVPKRILELMNVPGLSRENVASHLQKFRL 243
                          69******************.********************************8 PP
2Response_reg731.2e-24131211109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          +l+vdD+ + + +l+++l +  y +v+ +++++ al+ll+e++  +Dl+l D+ mpgm+G++ll++   e  +lp+i+++  g  +++  
  Cagra.2235s0034.1.p  13 ILVVDDDTSCLFILEKMLLRLMY-QVTICSQADVALTLLRERKdcFDLVLSDVHMPGMNGYKLLQQVGLEM-DLPVIMMSVDGRTTTVMT 100
                          89*********************.***************99999***********************6644.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga d+l Kp+ peel +
  Cagra.2235s0034.1.p 101 GINHGACDYLIKPIRPEELKN 121
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.0E-1441376IPR017053Response regulator B-type, plant
SuperFamilySSF521721.71E-349142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.0E-4010147No hitNo description
SMARTSM004481.5E-2811123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.23812127IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2113121IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.40E-2614126No hitNo description
PROSITE profilePS512949.645187246IPR017930Myb domain
SuperFamilySSF466893.4E-18188247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27188248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23191243IPR006447Myb domain, plants
PfamPF002491.8E-6192241IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAINDQFPTG LRILVVDDDT SCLFILEKML LRLMYQVTIC SQADVALTLL RERKDCFDLV  60
LSDVHMPGMN GYKLLQQVGL EMDLPVIMMS VDGRTTTVMT GINHGACDYL IKPIRPEELK  120
NIWQHVVRRK CAMNKELRNS QVLEDKKNSG SVETVYSASE CSEGSLMKRK KKKRSVDRED  180
NEDDENSKKS SRVVWSIELH QQFVNAVNQL GIDKAVPKRI LELMNVPGLS RENVASHLQK  240
FRLYLKRLSG VASQSKDTEC IKRYENIQAM VSSGQLHPQT LAALFGQPVE NHLSASFGVW  300
IPNDDLGSGR SQIQNFAVDV SSTSNRPVSV TTSMAVHGLS SSANFSQKGD ADNSNRDHRI  360
RQGYGSNVNE ESWILGKCSR QRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19187249264ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173KRKKKKR
2168173RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00098PBMTransfer from AT2G01760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2235s0034.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0881490.0AY088149.1 Arabidopsis thaliana clone 41875 mRNA, complete sequence.
GenBankAY0997260.0AY099726.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
GenBankAY1288870.0AY128887.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638473.10.0two-component response regulator ARR14 isoform X1
SwissprotQ8L9Y30.0ARR14_ARATH; Two-component response regulator ARR14
TrEMBLR0H7860.0R0H786_9BRAS; Two-component response regulator
STRINGCagra.2235s0034.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.10.0response regulator 14