PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.2235s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 121aa MW: 13800.4 Da PI: 6.8099 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 53 | 106 | 2 | 55 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 rk+ ++t+eq + Le+ F++n++++ +++e LA++l L rq+ vWFqNrRa++ Cagra.2235s0001.1.p 53 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAQHLMLRPRQIEVWFQNRRARY 106 78889***********************************************96 PP | |||||||
2 | HD-ZIP_I/II | 81.4 | 1.3e-26 | 53 | 107 | 1 | 55 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55 +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR+ Cagra.2235s0001.1.p 53 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAQHLMLRPRQIEVWFQNRRARYA 107 69***************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-19 | 37 | 103 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.18E-18 | 39 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.552 | 49 | 109 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-14 | 51 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.56E-15 | 52 | 106 | No hit | No description |
Pfam | PF00046 | 6.8E-16 | 53 | 106 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
LTISVPGFSS SPPSDEGSGG GREQLKLDMN RLPSSEDGED EELSHDDGSA PPRKKLRLTR 60 EQSRLLEDSF RQNHTLNPKQ KEALAQHLML RPRQIEVWFQ NRRARYAFNF LFFSFNIIGE 120 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.2235s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ431181 | 1e-128 | AJ431181.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper (Athb17 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001324758.1 | 8e-73 | homeobox-leucine zipper protein 17 | ||||
Swissprot | Q8S9N6 | 5e-67 | ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17 | ||||
TrEMBL | A0A1P8B175 | 2e-71 | A0A1P8B175_ARATH; Homeobox-leucine zipper protein 17 | ||||
STRING | Cagra.2235s0001.1.p | 1e-82 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4890 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 2e-54 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.2235s0001.1.p |
Publications ? help Back to Top | |||
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