PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.22019s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 331aa    MW: 34947.9 Da    PI: 9.0362
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.22019s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.4e-3189147259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed +++++tYeg+Hnh+
  Cagra.22019s0001.1.p  89 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAgACPVRKQVQRCAEDRSILITTYEGNHNHP 147
                           7****************************99***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-3373149IPR003657WRKY domain
SuperFamilySSF1182901.16E-2781149IPR003657WRKY domain
PROSITE profilePS5081128.90883149IPR003657WRKY domain
SMARTSM007741.6E-3588148IPR003657WRKY domain
PfamPF031061.2E-2690147IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MIHSASPPSL LESSNLRENG KRLLGREESP EESESNAWGN PNKVPKHNSS SSNNNNNGNG  60
NVIDQSAAEA TMRKARVSVR ARSEAPMISD GCQWRKYGQK MAKGNPCPRA YYRCTMAGAC  120
PVRKQVQRCA EDRSILITTY EGNHNHPLPP AAMAMASTTT AAASMLLSGS MSSQDGLMNP  180
TNLLARAILP CSSSMATISA SAPFPTITLD LTNSPNGNNP NMTTNNPLMQ FAQRPGFNPA  240
VLPQVVGQAL YYNQQQSKFS GLQLPAQPLQ IPATSSVSES VSAASAAIAS DPNFAAALAA  300
AITSIMNGSS HQNNNTNNNN VATSNGDNRQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-2375151176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.22019s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526480.0AY052648.1 Arabidopsis thaliana WRKY transcription factor 31 (WRKY31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633874.10.0probable WRKY transcription factor 31
SwissprotQ93WT01e-157WRK31_ARATH; Probable WRKY transcription factor 31
TrEMBLR0GHU50.0R0GHU5_9BRAS; Uncharacterized protein
STRINGCagra.22019s0001.1.p0.0(Capsella grandiflora)
STRINGXP_006283491.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.11e-135WRKY DNA-binding protein 31