PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.21772s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 304aa MW: 35061 Da PI: 10.3196 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.6 | 8.6e-22 | 19 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 ffk+ + dv ++++ lp +f+++++ ke s ++++++++grsWev++ +k+++ ++ ++GW +Fvk+n L +f++F+++g++ Cagra.21772s0001.1.p 19 FFKAVQSIDVASENMRALPHDFVRSFSD-KELSCKMKIRTQWGRSWEVEI--SKNPRFyFMEKSGWDKFVKDNALGHSEFLTFTHKGNM 104 89999******************99965.57899****************..******555569************************* PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v +f++ Cagra.21772s0001.1.p 105 CF--TVNIFKQ 113 **..9999976 PP | |||||||
2 | B3 | 36.8 | 6.8e-12 | 228 | 300 | 17 | 96 |
E--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 17 vlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++p +fa++h+ +ee+++ ++ +++g +sW+v + ++ +s +++GW++ vk+ L+ gD++ F+l++ +e l++ v Cagra.21772s0001.1.p 228 RIPVSFAKDHM--PEEKTMFKIHHQDGkKSWNVIYLMKFRS----FSGGWRSVVKEYPLDPGDTCKFTLIEPNE--LLLVV 300 79********7..4466789999999989******555555....89*********************997433..34444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-20 | 14 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-20 | 15 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.099 | 19 | 114 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.47E-19 | 19 | 112 | No hit | No description |
SMART | SM01019 | 3.0E-23 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-19 | 19 | 113 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.69E-15 | 208 | 302 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-13 | 210 | 302 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.264 | 212 | 303 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-15 | 215 | 303 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.93E-10 | 228 | 301 | No hit | No description |
Pfam | PF02362 | 5.2E-9 | 228 | 297 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MARNGDYLWC LQERKHEGFF KAVQSIDVAS ENMRALPHDF VRSFSDKELS CKMKIRTQWG 60 RSWEVEISKN PRFYFMEKSG WDKFVKDNAL GHSEFLTFTH KGNMCFTVNI FKQNGKEMIQ 120 PSQSRAFLAS SSRVKTEQRR GSVYNDVKKE EVLSPELSNR SPTTVVESNG GESYKRKLSF 180 GKKKAEETQN SKRTEKVARA RRDSAGASSS SVSEFTILFK KANQIFQRIP VSFAKDHMPE 240 EKTMFKIHHQ DGKKSWNVIY LMKFRSFSGG WRSVVKEYPL DPGDTCKFTL IEPNELLLVV 300 FKP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.21772s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006299339.1 | 0.0 | B3 domain-containing protein At2g16210 | ||||
Swissprot | Q5BPT7 | 1e-133 | Y2621_ARATH; B3 domain-containing protein At2g16210 | ||||
TrEMBL | R0G9A5 | 0.0 | R0G9A5_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.21772s0001.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16210.1 | 1e-130 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.21772s0001.1.p |
Publications ? help Back to Top | |||
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