PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.20132s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 389aa    MW: 42812.4 Da    PI: 5.2261
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.20132s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731277.9e-40181276397
                DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkife 90 
                           fqr+w+++Dei++LqGl+df+++tg+sp+d+++ +y+ vkk+isf+vsk q++eK+r+LKkK++++  k ak+g++p+f+k+hd+k+fe
  Cagra.20132s0006.1.p 181 FQRVWTDNDEIAVLQGLLDFRKDTGVSPYDNTNMVYQLVKKNISFDVSKVQFMEKLRSLKKKYENNLGKaAKNGDDPTFAKPHDRKAFE 269
                           9******************************************************************99899***************** PP

                DUF573  91 lskkiWg 97 
                           lsk +Wg
  Cagra.20132s0006.1.p 270 LSKLVWG 276
                           ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-32181276IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSKKREDPPP ASSSEEEVSE TRSGEDEESS SEGEDVVSSR KPSAVTMKPV VALAAPSEKQ  60
QVSDSESGSD EESDDSDSEP ENVETKPPLT QSKDSSVLKN EVSDSESEAE KKDDVVTKPT  120
VTPSKDSVLK NQDSKKVKSS ENSVAKRARE TDEGVSSDVK KVKKVVSASP SGEEEKKKSC  180
FQRVWTDNDE IAVLQGLLDF RKDTGVSPYD NTNMVYQLVK KNISFDVSKV QFMEKLRSLK  240
KKYENNLGKA AKNGDDPTFA KPHDRKAFEL SKLVWGAIEK TIESAVKSNG KSKQVACVKH  300
EHDSSLVNAK NCQDLGAKSS SLVRTLTRFG VDELAAQQGL DRLTSEDKKS LEEQWKALQV  360
REFDFYSQKT GFVHQVLAKV TEAFRSNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.20132s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641968.10.0probable transcription factor At1g11510
SwissprotC0SUU69e-99STKLA_ARATH; Probable transcription factor At1g11510
TrEMBLR0G9540.0R0G954_9BRAS; Uncharacterized protein
STRINGCagra.20132s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.17e-92DNA-binding storekeeper protein-related transcriptional regulator