PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2007s0003.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 278aa MW: 32162.3 Da PI: 5.9686

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2007s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.5	4.1e-26	158	207	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s e++++yF++pi++AAkeL++++T+LK++CR++GI+RWPhRk++sl Cagra.2007s0003.1.p 158 NSVSREMMKQYFYMPIAKAAKELNIGVTLLKKKCRELGIPRWPHRKLSSL 207 57899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.929	143	227	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-21	160	207	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MADQNPLMIW SEANNYDSFL QEDIFSFLDQ SLLIDQNSFI NPFKDIETES WFSSQDSIVN 60 PYSTTLAADH TFLASFDLEA ISSTFSLDVL SGLWNMESNG NYNNQVEPIQ DDRSRSTNSM 120 GDPNMEKISQ EDDNRIKETR NQKRIIVKRR NREDGVINSV SREMMKQYFY MPIAKAAKEL 180 NIGVTLLKKK CRELGIPRWP HRKLSSLNTL ITNLKESLQN TEGETNKSKL RDALEILEME 240 KKMIEEVPDL EFGNKTKRLR QACFKANYKR RRVFSSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	268	272	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2007s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006281487.1	0.0	protein RKD3
Swissprot	Q9FGD1	1e-149	RKD3_ARATH; Protein RKD3
TrEMBL	R0GPV5	0.0	R0GPV5_9BRAS; Uncharacterized protein
STRING	Cagra.2007s0003.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-140	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Cagra.2007s0003.1.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]