PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1995s0004.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 420aa MW: 47390.6 Da PI: 4.6315

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1995s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.1	9.8e-25	327	377	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+++l+d+ + F+lpi+ AAk++++c+TvLK+iCR+ ++RWPhRkiksl Cagra.1995s0004.1.p 327 TKKLTLKDITMLFHLPIETAAKQMNICPTVLKKICRKGSLMRWPHRKIKSL 377 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	317	397	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-21	329	377	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
PSSLVDDQGE DLYNDPFDGF GQFMEEDFSN VMADPNPNLM DLSFLENSLP PVFSTLPIVD 60 VDETKLLHEH ELSVADYDTA NNDFSFADGG YNISWDMFEP SNGDDLNDNI NNDVLGEIGN 120 NNVGEITRLE ESTRVFDDAN GPDFENGGTS TMHVLGPTIS DEMLVCTCCK MLRELVHFKE 180 GEMNTLEIFG EIGFFCHAIS MTQRFDSEST ERQSQTFHLK DLTMEEVKRF IEDYCSQRVA 240 SGLSLVQDTN AAFYQAMSAN SIFNQLPPML TLPSYTDVPV SLVSPDEALD VTPVPLHAVP 300 REEPTSSGVR KERKRRKTPL ATQRERTKKL TLKDITMLFH LPIETAAKQM NICPTVLKKI 360 CRKGSLMRWP HRKIKSLQTK IMSLKKLHTA AKDERTEAEI ERLQRRIDKI CSDALKNMK*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

PSSLVDDQGE DLYNDPFDGF GQFMEEDFSN VMADPNPNLM DLSFLENSLP PVFSTLPIVD  60
VDETKLLHEH ELSVADYDTA NNDFSFADGG YNISWDMFEP SNGDDLNDNI NNDVLGEIGN  120
NNVGEITRLE ESTRVFDDAN GPDFENGGTS TMHVLGPTIS DEMLVCTCCK MLRELVHFKE  180
GEMNTLEIFG EIGFFCHAIS MTQRFDSEST ERQSQTFHLK DLTMEEVKRF IEDYCSQRVA  240
SGLSLVQDTN AAFYQAMSAN SIFNQLPPML TLPSYTDVPV SLVSPDEALD VTPVPLHAVP  300
REEPTSSGVR KERKRRKTPL ATQRERTKKL TLKDITMLFH LPIETAAKQM NICPTVLKKI  360
CRKGSLMRWP HRKIKSLQTK IMSLKKLHTA AKDERTEAEI ERLQRRIDKI CSDALKNMK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1995s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006281616.2	0.0	uncharacterized protein LOC17875321
TrEMBL	R0GQG9	0.0	R0GQG9_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.1995s0004.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	7e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Cagra.1995s0004.1.p