PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1981s0012.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 316aa MW: 35713.6 Da PI: 4.3942

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1981s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.7	1.5e-06	191	229	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L +AveYIk Lq Cagra.1981s0012.1.p 191 RKEKLGDRITALQQLVSPF-----GKTDTASVLNEAVEYIKFLQ 229 677888999*****998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.277	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-11	189	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.99E-8	189	232	No hit	No description
SMART	SM00353	6.6E-4	190	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-10	193	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MQLQTFPKYT NKNYNMTEEF EIAGISTGTW WSSPTNTTAV FSGYSLPRSI EISLDATNFG 60 WQNIENKIND HNDGFMNMHN SFFEGFFDPN EQVLSDSWTN TTTPNTKSAL LESFPPFDNM 120 FLIDPEAESF LDNDIRIHKS KEQNTQDSKI ITSKRSDKPE ELEENSDEYS PRLLKRPRLE 180 TLSPLPSFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLNE AVEYIKFLQE QVTVLSNPEQ 240 NTIGSVQQQQ CSDKKPISST QEEEEECSSR RHVDLASRGL CLMPISASYP VAAAAASAEE 300 MNTSDFWNLP FCLNL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1981s0012.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023636444.1	0.0	transcription factor bHLH114
Swissprot	Q9M0X8	1e-156	BH114_ARATH; Transcription factor bHLH114
TrEMBL	R0FKE1	0.0	R0FKE1_9BRAS; Uncharacterized protein
STRING	Cagra.1981s0012.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14428	17	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05170.1	1e-113	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cagra.1981s0012.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]