PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1968s0093.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB_related

Protein Properties

Length: 274aa MW: 31412.9 Da PI: 9.9663

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1968s0093.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.1	4.7e-14	46	90	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Cagra.1968s0093.1.p 46 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 90 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-16	40	96	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.507	41	95	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.0E-7	44	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.5E-18	44	93	IPR006447	Myb domain, plants
SMART	SM00717	2.9E-11	45	93	IPR001005	SANT/Myb domain
Pfam	PF00249	8.4E-12	46	90	IPR001005	SANT/Myb domain
CDD	cd00167	1.14E-8	48	91	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MMNSPVFNTL THTATTIPVT IRKNTMSFLE DPMKKIRKPY TITKSRENWT EQEHDKFLEA 60 LHLFDRDWKK IEAFVGSKTV IQIRSHAQKY FLKVQKNGTN EHLPPPRPKR KANHPYPQKA 120 PKSVALTSSN ALLQHDYLYS TDSQPVISCT PKHGFVRCNV NTPNSVIKEE LGVPENCCST 180 SGSRDKQRTR TVTEKNDQES CGKPHRVMPN FAEVYSFIGS VFDPKTTDHV QRLKEMDPIN 240 LETVILLMRN LSVNLRSPEF EEQRKLISSY NAK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1968s0093.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010480196.1	0.0	PREDICTED: protein REVEILLE 3
Swissprot	Q6R0H0	1e-171	RVE3_ARATH; Protein REVEILLE 3
TrEMBL	R0GTE5	0.0	R0GTE5_9BRAS; Uncharacterized protein
STRING	Cagra.1968s0093.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1290	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01520.1	1e-173	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Cagra.1968s0093.1.p

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]