PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1968s0078.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 340aa    MW: 38420.7 Da    PI: 6.8853
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1968s0078.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.3e-12198223126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          y   +C+++ +tG+C yGd+CkF H+
  Cagra.1968s0078.2.p 198 YQPDICKDYKETGYCGYGDSCKFLHD 223
                          67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9196229IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8197224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009197225IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9198223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-13198228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.8E-13261315IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.09E-13273316No hitNo description
PfamPF139201.3E-8273315No hitNo description
PROSITE profilePS5008910.63274312IPR001841Zinc finger, RING-type
SMARTSM001849.2E-5274311IPR001841Zinc finger, RING-type
CDDcd001623.22E-9274315No hitNo description
PROSITE patternPS005180289298IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSEPKPSQQE ESQPQPAGQE SQPQQVCTFF KKPTKAKNIR KRTLDADEED EDSKSQSSIL  60
QNLKKVAKPD SKLYFSSGPS KSSTTTNEAP EKPVFHYDSS KEIQVQNDSK ATATLETETD  120
FNQDARAIRE RVLKKADESL KGNKKKASDE KLYTGIHGYT DHKAGFRREQ TISSEKAGGS  180
HGPLRASAHI RVSARFDYQP DICKDYKETG YCGYGDSCKF LHDRGDYKPG WQIEKEWEEA  240
EKVRKRNKAM GVEDEDDEAG NDSDEDDDAL PFACFICREP FVDPVVTKCK HYFCEHCALK  300
HHTKNKKCFV CNQPTMGIFN AAHEIKKRMA EERSKAEGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-66108338113326RING finger protein 113A
5z58_M1e-66108338113326RING finger protein 113A
6ff4_t1e-66108338113326RING finger protein 113A
6ff7_t1e-66108338113326RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1968s0078.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934190.0AB493419.1 Arabidopsis thaliana At1g01350 mRNA for hypothetical protein, partial cds, clone: RAAt1g01350.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305264.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_023645143.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLR0GQF70.0R0GQF7_9BRAS; Uncharacterized protein
STRINGCagra.1968s0078.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.10.0C3H family protein