PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1968s0041.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 289aa MW: 33180.4 Da PI: 10.0438

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1968s0041.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128.3	6.1e-40	14	141	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +GfrF+Ptdee v++yL++k + + ++++vi+++ i +++Pw+Lp + ++k ++k w fF ++++ky +g+r+ r+tksg+Wk tgk Cagra.1968s0041.1.p 14 VGFRFRPTDEEFVDDYLRPKNLKLDtSHVDRVISTLTISSFDPWELPsQsRIKLKDKAWCFFNRKENKYDKGERQIRKTKSGFWKITGKP 103 7****************9877773667778**********9525888899****************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++ ++ ++g k++ +fy ++ g+k+dWvmhey+l Cagra.1968s0041.1.p 104 KDIMR-NRVKIGEKRVVMFYLRKELGGSKSDWVMHEYHL 141 *.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.42E-47	7	159	IPR003441	NAC domain
PROSITE profile	PS51005	43.02	12	159	IPR003441	NAC domain
Pfam	PF02365	1.0E-20	14	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MAEALYCQEL ENTVGFRFRP TDEEFVDDYL RPKNLKLDTS HVDRVISTLT ISSFDPWELP 60 SQSRIKLKDK AWCFFNRKEN KYDKGERQIR KTKSGFWKIT GKPKDIMRNR VKIGEKRVVM 120 FYLRKELGGS KSDWVMHEYH LFSPVQMMMT YTICKVMFKG DEKDISSSPA DQNKALQEPR 180 NSTIKLVSLA QEVSFVISLS LRPTNILIIL CASTDNILGI DSKVSQALRT STDTTEVKRM 240 NPCDVARGTE IGEQGQEIII KNKRAGSFLR MIQKFVKKIS QCSPISRT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-25	9	144	14	145	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-25	9	144	14	145	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-25	9	144	14	145	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-25	9	144	14	145	NO APICAL MERISTEM PROTEIN
3swm_A	3e-25	9	144	17	148	NAC domain-containing protein 19
3swm_B	3e-25	9	144	17	148	NAC domain-containing protein 19
3swm_C	3e-25	9	144	17	148	NAC domain-containing protein 19
3swm_D	3e-25	9	144	17	148	NAC domain-containing protein 19
3swp_A	3e-25	9	144	17	148	NAC domain-containing protein 19
3swp_B	3e-25	9	144	17	148	NAC domain-containing protein 19
3swp_C	3e-25	9	144	17	148	NAC domain-containing protein 19
3swp_D	3e-25	9	144	17	148	NAC domain-containing protein 19
4dul_A	3e-25	9	144	14	145	NAC domain-containing protein 19
4dul_B	3e-25	9	144	14	145	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1968s0041.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006305025.2	1e-123	NAC domain-containing protein 3
Swissprot	Q5PP28	4e-69	NAC3_ARATH; NAC domain-containing protein 3
TrEMBL	R0ILL2	1e-122	R0ILL2_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.1968s0041.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04420.1	1e-104	NAC domain containing protein 48

Link Out ? help Back to Top
Phytozome	Cagra.1968s0041.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chou ML, et al. The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana. Int J Mol Sci, 2018. [PMID:29937503]