PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G04420.1 | ||||||||
Common Name | anac048, NAC048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 39037.7 Da PI: 5.0866 | ||||||||
Description | NAC domain containing protein 48 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.4 | 7.6e-42 | 4 | 132 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 p+G+rF+Ptd+e+vv+yL++k ++++ ++++vi++v i +++Pw+Lp + ++k ++++w fFs++++ky +g+++ r+tksgyWk tgk k++l+ + AT3G04420.1 4 PVGLRFRPTDKEIVVDYLRPKNSDRDtSHVDRVISTVTIRSFDPWELPcQsRIKLKDESWCFFSPKENKYGRGDQQIRKTKSGYWKITGKPKPILR-N 100 89*******************999984566678**************96348888999*************************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g kk+L+fy ++ g+k+dWvmhey++ AT3G04420.1 101 RQEIGEKKVLMFYMSKELGGSKSDWVMHEYHA 132 999***************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-48 | 2 | 150 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.173 | 3 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-22 | 4 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009047 | anatomy | stem |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MENPVGLRFR PTDKEIVVDY LRPKNSDRDT SHVDRVISTV TIRSFDPWEL PCQSRIKLKD 60 ESWCFFSPKE NKYGRGDQQI RKTKSGYWKI TGKPKPILRN RQEIGEKKVL MFYMSKELGG 120 SKSDWVMHEY HAFSPTQMMM TYTICKVMFK GDVREISSSS ASYGSEIEQS RDSLIPLLVN 180 DSEEEAQIED AIPIEEWETW LTDDGVDEQV NHIMNMKDDR NNHRPQKPLT GVLIDDSSDD 240 DDDSDLLSPT TNSIENSSTC DSFGSSDQIN LVSLTQEVSQ ALITSIDTPE KIKSPYDDAQ 300 GTGAGGQKLG QETREKKRAG FFHRMIQIFV KKIHQCSSIS RT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-28 | 4 | 137 | 18 | 147 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-28 | 4 | 137 | 18 | 147 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-28 | 4 | 137 | 18 | 147 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-28 | 4 | 137 | 18 | 147 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-27 | 4 | 137 | 21 | 150 | NAC domain-containing protein 19 |
3swm_B | 1e-27 | 4 | 137 | 21 | 150 | NAC domain-containing protein 19 |
3swm_C | 1e-27 | 4 | 137 | 21 | 150 | NAC domain-containing protein 19 |
3swm_D | 1e-27 | 4 | 137 | 21 | 150 | NAC domain-containing protein 19 |
3swp_A | 1e-27 | 4 | 137 | 21 | 150 | NAC domain-containing protein 19 |
3swp_B | 1e-27 | 4 | 137 | 21 | 150 | NAC domain-containing protein 19 |
3swp_C | 1e-27 | 4 | 137 | 21 | 150 | NAC domain-containing protein 19 |
3swp_D | 1e-27 | 4 | 137 | 21 | 150 | NAC domain-containing protein 19 |
4dul_A | 9e-28 | 4 | 137 | 18 | 147 | NAC domain-containing protein 19 |
4dul_B | 9e-28 | 4 | 137 | 18 | 147 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.27362 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 258571_at | 0.0 | ||||
Expression Atlas | AT3G04420 | - | ||||
AtGenExpress | AT3G04420 | - | ||||
ATTED-II | AT3G04420 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G04420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G04420 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY060587 | 0.0 | AY060587.1 Arabidopsis thaliana AT3g04420/T27C4_6 mRNA, complete cds. | |||
GenBank | BT000846 | 0.0 | BT000846.1 Arabidopsis thaliana At3g04420/T27C4_6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_566226.1 | 0.0 | NAC domain containing protein 48 | ||||
Swissprot | Q5PP28 | 1e-160 | NAC3_ARATH; NAC domain-containing protein 3 | ||||
TrEMBL | Q8W4R4 | 0.0 | Q8W4R4_ARATH; AT3g04420/T27C4_6 | ||||
STRING | AT3G04420.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Link Out ? help Back to Top | |
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Phytozome | AT3G04420.1 |
Entrez Gene | 819597 |
iHOP | AT3G04420 |
wikigenes | AT3G04420 |