PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1961s0096.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 289aa    MW: 31465 Da    PI: 6.0508
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1961s0096.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-12104148347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+ E+++++ + ++ G+g+Wk I++ + k Rt+ q+ s+ qky
  Cagra.1961s0096.1.p 104 PWTENEHKRFLIGLQKVGKGDWKGISKNFVKSRTPTQVASHAQKY 148
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.87397153IPR017930Myb domain
SuperFamilySSF466899.36E-1799153IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-17100151IPR006447Myb domain, plants
SMARTSM007178.6E-7101151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-10103148IPR009057Homeodomain-like
PfamPF002491.1E-9104148IPR001005SANT/Myb domain
CDDcd001671.30E-6104149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAAVSSSSET GDSGAAGKRD EIMLFGVRVV IDPMRKCVSL NNLSDYEEKS SPDDEIPKTV  60
VPGAGDGDDK NEAVIVADGY ASANDAVHIS CSSAGNRERK RGVPWTENEH KRFLIGLQKV  120
GKGDWKGISK NFVKSRTPTQ VASHAQKYFL RRTNLNRRRR RSSLFDITTE TVTEMPMEQD  180
QAQENSPLPE TNVSSGHQVM QVNAEVAVMT KTESSAQTFN LNDSYLVPVT FQANPAFNLN  240
TEAAPLSLNL SLASSFNLNE QPNSRHSAFT MMPSFSDGDS NSSIIRVA*
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00149DAPTransfer from AT1G19000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1961s0096.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644829.10.0transcription factor MYB1R1
SwissprotQ2V9B04e-57MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLR0IPK70.0R0IPK7_9BRAS; Uncharacterized protein
STRINGCagra.1961s0096.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19000.21e-151MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]