PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1914s0035.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 461aa    MW: 50124.8 Da    PI: 8.5241
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1914s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.6e-09138158526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+++ + G C++G++C+F H+
  Cagra.1914s0035.1.p 138 VCKYWKA-GNCNRGEQCQFLHS 158
                          7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.5E-7132158IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-8133159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516133160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-7134158IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6136158IPR000571Zinc finger, CCCH-type
SMARTSM003202.8E-4164203IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.0E-43166454IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.56E-43166212IPR017986WD40-repeat-containing domain
PROSITE profilePS5008212.981171212IPR001680WD40 repeat
PROSITE profilePS5029417.166171375IPR017986WD40-repeat-containing domain
PfamPF117153.3E-6186220No hitNo description
PROSITE patternPS006780190204IPR019775WD40 repeat, conserved site
PRINTSPR003201.0E-6190204IPR020472G-protein beta WD-40 repeat
SMARTSM0032058243280IPR001680WD40 repeat
SuperFamilySSF509781.56E-43250457IPR017986WD40-repeat-containing domain
SMARTSM003206.2E-5288326IPR001680WD40 repeat
PfamPF004005.9E-6290326IPR001680WD40 repeat
PROSITE profilePS5008210.809310335IPR001680WD40 repeat
PROSITE patternPS006780313327IPR019775WD40 repeat, conserved site
PRINTSPR003201.0E-6313327IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0017329366IPR001680WD40 repeat
PfamPF004000.015331365IPR001680WD40 repeat
PRINTSPR003201.0E-6353367IPR020472G-protein beta WD-40 repeat
SMARTSM00320470372413IPR001680WD40 repeat
SMARTSM003200.11416453IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDEATMLDSV VQSSKVGIFS MFSMNYEAPR RYSQGRHYGV KRQQDFAADV VSRGPYGPYD  60
NTMKGPYKRS RNLVWKAPGG NRPKQNEVNG STKPPVLGTR CSVSNQPRKN SVYGPKSSPI  120
SDTRGCGSRD NSSTKKIVCK YWKAGNCNRG EQCQFLHSWS CFPGLAMVAA LEGHTKDIKG  180
ITLPQGSDKL FSVSCDGTLR IWDCHTGQCV HTINLQAEAG SLISEGPWVF LGLQNAVKAF  240
NVQTSKDLHL DGVVGQVHAM TVANGMLFAG TSSGSISVWK ATDSESDPFK YLTSLEGHHS  300
GEVTCFVAGG QLLYSGSVDK TIKVWDLNTL QCITTLKQHT NTVTSLLCWD KCLISSSLDK  360
TINVWACSDN GSLKVTHTRR QQQSVHALCG MHDAEAKPII FCSYQNETVG IFDLPSFEER  420
GKMFSTDTIS TLAVGPDGLL FSGDKSGNLR VWSLAAGTKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-191594576322Tako8
6g6n_A5e-191594576322Tako8
6g6n_B5e-191594576322Tako8
6g6n_C5e-191594576322Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1914s0035.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285078.10.0zinc finger CCCH domain-containing protein 59 isoform X1
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLR0F8M80.0R0F8M8_9BRAS; Uncharacterized protein
STRINGCagra.1914s0035.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein