PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1873s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TALE | ||||||||
Protein Properties | Length: 637aa MW: 72225.2 Da PI: 7.0164 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.1 | 7.1e-09 | 408 | 445 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Cagra.1873s0010.1.p 408 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 445 554459******************************88 PP | |||||||
2 | BELL | 107.4 | 8.8e-35 | 266 | 337 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++elqk+kakLls+lee+++rY +y+eq+++ ++sFea++g+g+a++Yt+lA++a+SrhFrcLkd +++qi Cagra.1873s0010.1.p 266 EFMELQKRKAKLLSMLEELKRRYGHYREQMRVAAASFEAAVGVGAAEVYTALASRAMSRHFRCLKDGLVGQI 337 679*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 1.0E-42 | 192 | 333 | IPR006563 | POX domain |
SMART | SM00574 | 9.5E-68 | 198 | 335 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.017 | 386 | 449 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.30E-10 | 389 | 450 | No hit | No description |
SMART | SM00389 | 5.6E-9 | 389 | 453 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.29E-17 | 390 | 457 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.1E-28 | 392 | 456 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.5E-18 | 406 | 445 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
MARDQFYGHH HNQEQQQQQH QMINQIQGFD ETNQNQTDHH HHYNHQIFGS NSNMGMMIDF 60 SKQQQIRMTT SGPDHQHHHH HHDQTSGGTD QNQLLEDSSS TMRLCNVNND FPSEVNDERP 120 PQRPSQGLSL SLSSSNPSSI SLQSFDLRTQ QGYSGKSSTH HQNLQHSQMM MMMMNSHHQN 180 NNHQHHHHQF QIGSSKYLSP AQELLSEFCS LGVKESDEEV MMMKNKRKQK GKQQEDWDTS 240 HNNNDQQDQS ATTSSKKHVP PLHSLEFMEL QKRKAKLLSM LEELKRRYGH YREQMRVAAA 300 SFEAAVGVGA AEVYTALASR AMSRHFRCLK DGLVGQIQAT SQALGEREED SRAVSIAARG 360 ETPRLRLLDQ ALRQQKSYRQ MTLVDAHPWR PQRGLPERAV TTLRAWLFEH FLHPYPSDVD 420 KHILARQTGL SRSQVSNWFI NARVRLWKPM IEEMYCEETR GEQVMDITTT TTTTTNPMMM 480 MMIDTKPDPN QMIRIEPESL SSIVTNPTSK MTGQTKATTT TFGSTFDFSL YGNNQAVTYA 540 GEGGGPRGDV SLTLGLQQRN DGNGGVSLAL SPLTTAHQGT TTTTTGQLYY GTSNIRDHID 600 QEGPVHQYSA SMLDDDQVQN LPYRNLMGAQ LLHDLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-15 | 395 | 453 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-15 | 395 | 453 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 3e-15 | 395 | 453 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-15 | 395 | 453 | 5 | 63 | Homeobox protein Meis2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1873s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU39944 | 0.0 | U39944.2 Arabidopsis thaliana homeobox protein (BEL1) mRNA, complete cds. | |||
GenBank | AY049237 | 0.0 | AY049237.1 Arabidopsis thaliana AT5g41410/MYC6_12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006283321.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 0.0 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | R0GHD6 | 0.0 | R0GHD6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1873s0010.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 0.0 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1873s0010.1.p |
Publications ? help Back to Top | |||
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