PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1822s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | VOZ | ||||||||
Protein Properties | Length: 487aa MW: 54034.6 Da PI: 6.0804 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 444.1 | 1.7e-136 | 206 | 422 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 pppsaflgpkcalwdc+rpaqg++w+qdycssfha+la+neg+pg++pv+rp+gi+lkdgllfaalsak+ gk+vgipecegaatakspw Cagra.1822s0007.1.p 206 PPPSAFLGPKCALWDCPRPAQGFDWFQDYCSSFHAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPW 295 89**************************************************************************************** PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldal 180 na+elfdl++le+et+rewlffdkprrafesgnrkqrslpdy+grgwhesrkq+m efgglkrsyymdpqp+++fewhlyeyein++da+ Cagra.1822s0007.1.p 296 NAPELFDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMVEFGGLKRSYYMDPQPLHHFEWHLYEYEINKCDAC 385 ****************************************************************************************** PP VOZ 181 alyrlelklvdekksakgkvskdsladlqkklgrlta 217 alyrlelklvd+kk++kgkvs+ds+adlqk++grlta Cagra.1822s0007.1.p 386 ALYRLELKLVDGKKNSKGKVSNDSVADLQKQMGRLTA 422 ***********************************97 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQSAR KESRGTDVTL LEEQVNQMLR 60 EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD ATSKLAAPKP EPADQNLEAG 120 KAAAFQRGYN IVQGKSEHGF PLANHCKDPS LVVGNTNFDG TANLEYNQFD LQQEFQPNFN 180 GGFNDCPSYA VEGPLHISTF MPTICPPPSA FLGPKCALWD CPRPAQGFDW FQDYCSSFHA 240 ALAFNEGPPG MNPVVRPGGI GLKDGLLFAA LSAKAGGKDV GIPECEGAAT AKSPWNAPEL 300 FDLTVLESET LREWLFFDKP RRAFESGNRK QRSLPDYNGR GWHESRKQIM VEFGGLKRSY 360 YMDPQPLHHF EWHLYEYEIN KCDACALYRL ELKLVDGKKN SKGKVSNDSV ADLQKQMGRL 420 TAEFPPENNN MTTTANNNKR CIKGRPKVNT KVATVNVQNT VEQATDYGVG EEFNYLVGNL 480 SDYYIA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1822s0007.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB125256 | 0.0 | AB125256.1 Arabidopsis thaliana AtVOZ1 mRNA for transcription factor AtVOZ1, complete cds. | |||
GenBank | AK227014 | 0.0 | AK227014.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-45-I22. | |||
GenBank | BT020261 | 0.0 | BT020261.1 Arabidopsis thaliana At1g28520 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303989.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | R0GLR4 | 0.0 | R0GLR4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1822s0007.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6667 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1822s0007.1.p |
Publications ? help Back to Top | |||
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