PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1772s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 311aa    MW: 35161.6 Da    PI: 7.2531
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1772s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.85.8e-181050242
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         +i+n+s r+ tf kRr+g+lKK +ELS+LC+++++ ii+s+
  Cagra.1772s0003.1.p 10 FISNDSSRKATFKKRRKGLLKKVNELSTLCGINACAIIYSP 50
                         8***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.619149IPR002100Transcription factor, MADS-box
CDDcd002661.51E-23285No hitNo description
SuperFamilySSF554559.55E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-9323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTRKKVKLAF ISNDSSRKAT FKKRRKGLLK KVNELSTLCG INACAIIYSP YDSNPEVWPS  60
NAGVQRIVSE FKTLPEMDQH KKMVDQETFL RQRIAKAYEH LKRQKKDNRE LEMTEVMFQC  120
LIGNMGMFHM NIMDLNDLGY LIEQYLKDIN RRFEILQSSG MEIGESSNAG ADAATFERNG  180
SMEVMASTAA PTTTTNEAGA SSSSFAAFLN PLQQQQQFRH PSPSPHVGLY EQPRSLSLSL  240
NQNYGQNQQQ WFMEMVNHPQ PLNYADEQKG FLFMDDNQHD HQQTLGDSSA AASPSSTIPA  300
TNPNDTTWFR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFISNDSSRKATFKKRR
22125KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1772s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298183.10.0agamous-like MADS-box protein AGL80 isoform X1
SwissprotQ9FJK31e-126AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLR0G6N60.0R0G6N6_9BRAS; Uncharacterized protein
STRINGCagra.1772s0003.1.p0.0(Capsella grandiflora)
STRINGXP_006298183.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-120AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]