PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.17198s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 239aa MW: 26530.9 Da PI: 5.9641 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.6e-18 | 22 | 66 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE++ +++ +++lG++ W++Ia+ ++ +Rt++++k++w++ Cagra.17198s0001.1.p 22 RGKFTPEEEDEIIKHHALLGNR-WAAIAKQLP-NRTDNDIKNHWNSC 66 89********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.333 | 1 | 16 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-11 | 2 | 27 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.1E-23 | 3 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.274 | 17 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-17 | 21 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-17 | 22 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.74E-12 | 24 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 28 | 71 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
LQRCGKSCRL RWLNYLRPGI KRGKFTPEEE DEIIKHHALL GNRWAAIAKQ LPNRTDNDIK 60 NHWNSCLKKR LAKSGIDPMT HEPKSLTIDV VSSSSSTTSS PIPSPCSSSF SSSSSSAGSA 120 RLLNKLAAGI SSRKHGLERI KTVILSEQPR DQAEAEEEKK MLISMEHDEM IACLMDIDEK 180 MNIASFDEVP FDGYSTATAT TTSGFMAFDD FYSPVNPDTT LYVSDFYDET EQLGLFLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-21 | 3 | 71 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.17198s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006302649.1 | 1e-176 | transcription factor MYB106 | ||||
Swissprot | O64399 | 2e-41 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | R0GI52 | 1e-174 | R0GI52_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.17198s0001.1.p | 1e-178 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74430.1 | 7e-98 | myb domain protein 95 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.17198s0001.1.p |