PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1681s0032.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 651aa    MW: 72445.8 Da    PI: 9.5357
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1681s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.8e-06231250525
                          --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                          +C+ f++ G+C+ G+ C+F+H
  Cagra.1681s0032.1.p 231 PCK-FLAAGFCRNGNYCRFSH 250
                          799.6666************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.061226253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MSGLGRTHVS NWDSKEDSHH HHSSLTASSG AFYRDKESEP VRFNSESNGS RRSGAETNQH  60
PGEARSRSIV SQSNDNSYDS ERDDTRQQIF PRNGSRSNSM SRSRSRSPVY RGKHKTRTLV  120
SPTPIREFNK RGSGHHFDQS NDYGLEDDTR KPRKTKYHTD DFRGEAMMTG ARFSVYNTKF  180
PEDNSRREHL HDNGFSDPRL KRHRSEFTGV KDTQRRNGDG EGQFHRTSNI PCKFLAAGFC  240
RNGNYCRFSH HGAGRKQPQD KHFYRQDSNN NNKWNDVERL DNGRLGGIEV SRASKGVSEP  300
NRNSSSWIDD MEMSPDWNYG VQSLKNPVKE EHSVGIIGQS SQSQVLKGDL VSHYDQRSSQ  360
SYSHPVNVTP VQGFSQKHNV LPCQSSLTAG GSQQVLATAA ADLSVGSNLS NVESGKVYQN  420
NHQSTVERPV LVQNTVSKEQ LDKITSISAT IAQFLANGDP IPELVKALQM PLHSESSMDI  480
QPNQATTTVH SQSNVMSSNP NQLCGLGVNI GAGGVPVVTA SQVNNVSGIQ DLTLNPKGCE  540
ENRNKKTHES SKEEEGKKTG EDTNDPKEMR AFKFALVEVV KELLNPTWKE GKMDKDGYKN  600
IVKKVVEKVT VTMQSGSVPQ TQENIDHYLS ASKPKLTKLV EAYISKIKKT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1681s0032.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1757972e-83AK175797.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-38-N23.
GenBankAK2217592e-83AK221759.1 Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL21-60-F07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641197.10.0zinc finger CCCH domain-containing protein 38
SwissprotQ9LIH50.0C3H38_ARATH; Zinc finger CCCH domain-containing protein 38
TrEMBLR0G3V20.0R0G3V2_9BRAS; Uncharacterized protein
STRINGCagra.1681s0032.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91601215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-12C3H family protein