PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1671s0374.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 630aa    MW: 70164 Da    PI: 9.7596
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1671s0374.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07527576147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Cagra.1671s0374.1.p 527 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 576
                          6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.864522581IPR017930Myb domain
SMARTSM007177.0E-7526579IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-10527577IPR009057Homeodomain-like
CDDcd116601.27E-16528578No hitNo description
SuperFamilySSF466892.27E-15528609IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS  60
SSSSNNASGN NDDQCAVKTE QLNSGELMVE EETTNCDHNN NNPERSFFVS EILPKSHETQ  120
SFNRSPSPLT EFHFGSSSGI TSDSSEKFET QDLVYEDTKI DNSDHCYRSE CNDKKPMLGG  180
LNFEAKLSRN VLAKDENHIG SGFRKPISQN PSACSDDIDL HGKENDDGEN FSARYRTKSF  240
RSTLRIGDRR IRKVLASKYC KVSPKPRDTT VTSSDLDMKH DYYSKKHCLK SLRSERNFPI  300
KKRRYFDGYT ASQSEETAKT DGLSGSPRKA SGFLSSIACQ KQPALQSRDS HVKLGIKSFR  360
VPELFIEIPE TATVGSLKRT VLEAVTSILG GGLRIGVLAH GKKIRDDSKM LLQSGISLDT  420
LSDTLGFCFE PNPPQSTKPL PPEDNSDYVR PCNVPNTLPR CLPSPGKHAK PSNSVESDLD  480
SKPSAPNRAK TIYSRALIPV PPLHAQALTV VPPRKTKRSE VAQRRIRRPF SVAEVEALVQ  540
AVERLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV  600
LTAHAYWSQQ QGKHQLLEGP HKLETSLGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-575146164106Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1671s0374.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195350.0AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303609.10.0telomere repeat-binding protein 5
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLR0GKR50.0R0GKR5_9BRAS; Uncharacterized protein
STRINGCagra.1671s0374.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2