PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1671s0372.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 699aa    MW: 79459.5 Da    PI: 5.8811
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1671s0372.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.32.1e-1053196952373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPi 90 
                          ++lL+ cA+ vs+gd+  a+ lL ++++++sp gd+ qR+a++f++AL+arl++s+ ++ ++   + ++++++ ++ l+++++f  +sP+
  Cagra.1671s0372.1.p 319 RTLLTLCAQSVSAGDKITADDLLRQIRKQSSPLGDASQRVAHFFANALEARLQGSSGTMIQSYyDSITSKKRTAAQILKSYEVFLSASPF 408
                          6799**************************************************5555555553777777788***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +++ ++  N++Il+a++g++ +HiiDf+i +G+QWp ++q L + + g  +lRiTg++ p++g   +e+++ tg+rL+++++++g+pfe+
  Cagra.1671s0372.1.p 409 MTLIYFFSNKMILDAAKGASVLHIIDFGILYGFQWPMFIQHLEKSKIGLRKLRITGIELPQHGfrPTERIQDTGRRLTEYCKRFGIPFEY 498
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          n++++k++e++++ee++++p+E+laVn vl+ ++l d +   e+ +rd +Lkl+++++P+v+  +  + + n++ F +rf eal +ysal
  Cagra.1671s0372.1.p 499 NAIASKNWETIRIEEFKIRPNEVLAVNTVLRFKNLRDVTPGEEDcPRDGFLKLIRDMNPNVFLSSTINGSFNAPFFTTRFKEALFHYSAL 588
                          ***99*******************************9999999889******************************************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                          fd + a l+re+ eri  E e+ gre++nv+aceg +r+er et+++W+ r+ +aGFk+ p++ + +++ +  ++k +  + + ++e+s+
  Cagra.1671s0372.1.p 589 FDLFGAALSRENPERIHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMVRAGFKQKPVEAELVESFRKKMKKWGyHKDFVLDEDSN 678
                          ****************************************************************************999999******** PP

                 GRAS 357 slvlgWkdrpLvsvSaW 373
                          ++++gWk+r L+s S+W
  Cagra.1671s0372.1.p 679 WFLQGWKGRILFSSSCW 695
                          ***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.807292675IPR005202Transcription factor GRAS
PfamPF035147.1E-103319695IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MDSKNYSRVV NGFEYYDVSF LPNQIPGSGF GVPSSSDFDL RIDQYHQPSN WVPASLDQYS  60
PPADEIDSEN TLLKYVNQLL MEESLAEKQS MSYDSLALRQ TEEMLQQVIN ESHLPDSITS  120
TSTNSSGDYW NSSNSNSSVS IETAANSTEA EVLYDNHLGD SGVVSFSGSN MLQAGKPANE  180
VLVRSMFSDA DSVMQFQRGL EEASKFLPNT DKWIFNLEPE KGRVVQVKKE REWSGISKTR  240
KSHHAREEED DDLEETRSSK QYAVDVEDGK LTEMFDKVLL LDGECDPQIK EDGENGSSKV  300
QAKKGRGRVK KKSQAVDFRT LLTLCAQSVS AGDKITADDL LRQIRKQSSP LGDASQRVAH  360
FFANALEARL QGSSGTMIQS YYDSITSKKR TAAQILKSYE VFLSASPFMT LIYFFSNKMI  420
LDAAKGASVL HIIDFGILYG FQWPMFIQHL EKSKIGLRKL RITGIELPQH GFRPTERIQD  480
TGRRLTEYCK RFGIPFEYNA IASKNWETIR IEEFKIRPNE VLAVNTVLRF KNLRDVTPGE  540
EDCPRDGFLK LIRDMNPNVF LSSTINGSFN APFFTTRFKE ALFHYSALFD LFGAALSREN  600
PERIHFEGEF YGREVMNVIA CEGVDRVERP ETYKQWQVRM VRAGFKQKPV EAELVESFRK  660
KMKKWGYHKD FVLDEDSNWF LQGWKGRILF SSSCWVPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-413186955374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1671s0372.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0224640.0AC022464.4 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305860.20.0scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLR0INN70.0R0INN7_9BRAS; Uncharacterized protein
STRINGCagra.1671s0372.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein