PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1655s0066.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 339aa    MW: 38556.5 Da    PI: 4.4387
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1655s0066.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1876126155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          + ++GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a++ ++g
  Cagra.1655s0066.1.p  76 CSFRGVRQRI-WGKWVAEIREP---N-RgSRLWLGTFPTAEEAASAYDEAARVMYG 126
                          579****998.**********8...3.35**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1276126IPR001471AP2/ERF domain
CDDcd000182.44E-3176134No hitNo description
PROSITE profilePS5103222.08977134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3177135IPR001471AP2/ERF domain
SMARTSM003801.8E-3877140IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-2178135IPR016177DNA-binding domain
PRINTSPR003678.7E-107889IPR001471AP2/ERF domain
PRINTSPR003678.7E-10100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010286Biological Processheat acclimation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAIYDQTGNN IPKKRKSRAR ADGLTVAERL KKWKEYNETV DASTIIEGEK PRRRVPAKGS  60
KKGCMKGKGG PENPHCSFRG VRQRIWGKWV AEIREPNRGS RLWLGTFPTA EEAASAYDEA  120
ARVMYGPLAR LNFPQCVGSE FTSTSSQSEV CTLEDKAVLC GDICVKQEDT DCESKQYSQV  180
LDFKEESGET RRDNCAVGHQ DADTVLDYDL LKEFEQRYWG EAMTEEERLK QEEEEKVKQE  240
EEEMQQHQHQ QQQQLDLLTV GDYGWPWPND MENEQSSWDP NEFFDIDELL GDMSEGILPG  300
PGQSEDQNKI DSGSYDLHPL HLEPHDGHEF DGLSSLDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1778134360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00346DAPTransfer from AT3G11020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1655s0066.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642166.10.0dehydration-responsive element-binding protein 2B
SwissprotO821331e-164DRE2B_ARATH; Dehydration-responsive element-binding protein 2B
TrEMBLR0G5H10.0R0G5H1_9BRAS; Uncharacterized protein
STRINGCagra.1655s0066.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.11e-155DRE/CRT-binding protein 2B
Publications ? help Back to Top
  1. Djafi N, et al.
    The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase.
    Front Plant Sci, 2013. 4: p. 307
    [PMID:23964284]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim K, et al.
    Alleviation of salt stress by enterobacter sp. EJ01 in tomato and Arabidopsis is accompanied by up-regulation of conserved salinity responsive factors in plants.
    Mol. Cells, 2014. 37(2): p. 109-17
    [PMID:24598995]
  4. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  5. Lee SY,Boon NJ,Webb AA,Tanaka RJ
    Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(10): p. 2147-2160
    [PMID:27497445]