PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.1655s0054.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 200aa MW: 22564.8 Da PI: 8.8143 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.8e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +++++E++ +++ +++lG++ W+ Ia+ ++ +Rt+ ++k++w++ Cagra.1655s0054.1.p 24 RSKFSPQEEQEIIKFHALLGNR-WSVIAKQIP-NRTDHDIKNHWNSC 68 789*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.205 | 1 | 18 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-11 | 4 | 30 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.51E-21 | 5 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.365 | 19 | 73 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-14 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-15 | 24 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-10 | 26 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-19 | 31 | 73 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
TGLQRCGKSC RLRWLNYLRP GIKRSKFSPQ EEQEIIKFHA LLGNRWSVIA KQIPNRTDHD 60 IKNHWNSCLK KRLAKGRTDP MMTPEPALVT VDEATSTSTR SPSPAPSTTF SSTGFARLLN 120 KLAAGIASRK YRLDKIKMVI LTEQPREASA KENMLITMEE EDLITCFMDI DEKLSTASFC 180 ELPCDDSTTY SYATSDWLN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-20 | 5 | 73 | 40 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.1655s0054.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC254608 | 0.0 | AC254608.1 Capsella rubella clone CAP16-D12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298432.1 | 1e-141 | transcription factor MYB106 | ||||
TrEMBL | R0I0D0 | 1e-140 | R0I0D0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1655s0054.1.p | 1e-147 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G74430.1 | 2e-77 | myb domain protein 95 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.1655s0054.1.p |