PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1642s0038.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 294aa MW: 32488.5 Da PI: 6.722 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.7 | 1e-27 | 167 | 227 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqKe+ gs+fpr+YYrCt++ +Cp+kk+v+r ++dp ++ +tY+g+H+++ Cagra.1642s0038.1.p 167 DDNHTWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLDDDPFTFRVTYRGSHTCH 227 8****************************999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-27 | 158 | 227 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-25 | 162 | 228 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-36 | 166 | 228 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.013 | 167 | 229 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-25 | 167 | 227 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDQEVVMSMI FHGIKLVKTL ESSLPEKPPE SLSTSLGEIA KTFGDANERL KMLLLEMRNS 60 EAALNQTKPV IVSVSNQMLV QMEPGLMQEY SFRRGGSSTS SQGTEAMFQT QLMVVEGSGG 120 RILTAAEGSG GVSGSSTPRL RRRKDEGEDQ TVLVAALRTG NTDMPPDDNH TWRKYGQKEI 180 LGSRFPRAYY RCTHQKLYNC PAKKQVQRLD DDPFTFRVTY RGSHTCHIYS TAPTTSVTVA 240 ATTGHSIDYG SPIHDMTDAM FGTSGVGANM DFIFPFNDPT QRFRRLDDGD DHQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-22 | 167 | 226 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1642s0038.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493584 | 0.0 | AB493584.1 Arabidopsis thaliana At2g40740 mRNA for hypothetical protein, partial cds, clone: RAAt2g40740. | |||
GenBank | DQ056575 | 0.0 | DQ056575.1 Arabidopsis thaliana WRKY family transcription factor (At2g40740) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294727.1 | 0.0 | WRKY transcription factor 55 | ||||
Swissprot | Q9SHB5 | 1e-161 | WRK55_ARATH; WRKY transcription factor 55 | ||||
TrEMBL | R0HQP8 | 0.0 | R0HQP8_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1642s0038.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3641 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 1e-130 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1642s0038.1.p |
Publications ? help Back to Top | |||
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