PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1637s0009.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GATA | ||||||||
Protein Properties | Length: 298aa MW: 33050.4 Da PI: 8.2302 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.6 | 2.2e-20 | 216 | 250 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C ttkTp+WR+gp+g+ktLCnaCG++yr+ +l Cagra.1637s0009.2.p 216 CTHCETTKTPQWREGPSGPKTLCNACGVRYRSGRL 250 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.0E-20 | 210 | 260 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.24E-15 | 214 | 273 | No hit | No description |
PROSITE profile | PS50114 | 12.281 | 214 | 246 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.3E-15 | 214 | 247 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.50E-17 | 215 | 264 | No hit | No description |
Pfam | PF00320 | 4.2E-18 | 216 | 250 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 216 | 241 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MNWLPEEDFK GILSDDFFDD LVDQLDCPLE DTNGEGDWVA KFQDLEPPPM DMFPTLPCHL 60 TSCANAKPAP LGFHKTVPPL KHSSSSEALS GINSTLHQSS PPPDIKVSKM FQSLSPVSVF 120 VSSCDSLSPQ NSRSQGLAFP VKGMRSKRKR PTTLRFSYLL PFEPRMPEKL TPGESGSESY 180 HSSEQHAKKK RKIQLTTHTV SSSFEASNSD GIVRKCTHCE TTKTPQWREG PSGPKTLCNA 240 CGVRYRSGRL VPEYRPASSP TFIPSLHSNS HRKIIEMRRK DDNQFDTSMM HVVISGA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00130 | DAP | Transfer from AT1G08010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1637s0009.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006304051.1 | 0.0 | GATA transcription factor 11 | ||||
Swissprot | Q6DBP8 | 1e-160 | GAT11_ARATH; GATA transcription factor 11 | ||||
TrEMBL | R0IF88 | 0.0 | R0IF88_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1637s0009.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 1e-147 | GATA transcription factor 11 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1637s0009.2.p |