PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1637s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 298aa    MW: 33050.4 Da    PI: 8.2302
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1637s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.2e-20216250135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C ttkTp+WR+gp+g+ktLCnaCG++yr+ +l
  Cagra.1637s0009.1.p 216 CTHCETTKTPQWREGPSGPKTLCNACGVRYRSGRL 250
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-20210260IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-15214273No hitNo description
PROSITE profilePS5011412.281214246IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-15214247IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.50E-17215264No hitNo description
PfamPF003204.2E-18216250IPR000679Zinc finger, GATA-type
PROSITE patternPS003440216241IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MNWLPEEDFK GILSDDFFDD LVDQLDCPLE DTNGEGDWVA KFQDLEPPPM DMFPTLPCHL  60
TSCANAKPAP LGFHKTVPPL KHSSSSEALS GINSTLHQSS PPPDIKVSKM FQSLSPVSVF  120
VSSCDSLSPQ NSRSQGLAFP VKGMRSKRKR PTTLRFSYLL PFEPRMPEKL TPGESGSESY  180
HSSEQHAKKK RKIQLTTHTV SSSFEASNSD GIVRKCTHCE TTKTPQWREG PSGPKTLCNA  240
CGVRYRSGRL VPEYRPASSP TFIPSLHSNS HRKIIEMRRK DDNQFDTSMM HVVISGA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1637s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304051.10.0GATA transcription factor 11
SwissprotQ6DBP81e-160GAT11_ARATH; GATA transcription factor 11
TrEMBLR0IF880.0R0IF88_9BRAS; Uncharacterized protein
STRINGCagra.1637s0009.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-147GATA transcription factor 11