PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1535s0020.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 706aa    MW: 77568.1 Da    PI: 7.198
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1535s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.3e-06301321526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f + G Ck Gd C +aHg
  Cagra.1535s0020.1.p 301 PCPDFKK-GSCKQGDMCEYAHG 321
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.2E-1639162IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.2E-1739182IPR020683Ankyrin repeat-containing domain
SMARTSM002480.1382112IPR002110Ankyrin repeat
PROSITE profilePS5029716.06982175IPR020683Ankyrin repeat-containing domain
PfamPF127961.8E-1082151IPR020683Ankyrin repeat-containing domain
CDDcd002049.29E-1584160No hitNo description
PROSITE profilePS5008811.755117152IPR002110Ankyrin repeat
SMARTSM002481.1E-5117149IPR002110Ankyrin repeat
SMARTSM003561.2E-4296322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4301323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915301323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-4329359IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.831331355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MCGLAKKLDT EKTLTSLSDQ ESESLAKPMN DAEWEHSFSA LLEFAADNDV EGFKRQLSVV  60
SCINQMGLWY RRQRFVRRMV VEQRTPLMVA SIYGSLDVVK LILSFPEAEL NLSCGPDKST  120
ALHCAASGAS VNSLDVVKLL LSAGADPNIP DAHGNRPVDV LVVSPQAPGL RTILEEILKK  180
DEIVSEDLHA SSSSLGSSFR SLSSSPDNGS SLLSLDSVSS PTKPNGTDAT FASEKKEYPI  240
DPSLPDIKSG IYSTDEFRMF SFKIRPCSRA YSHDWTECPF AHPGENARRR DPRKFHYTCV  300
PCPDFKKGSC KQGDMCEYAH GVFECWLHPA QYRTRLCKDG MGCNRRVCFF AHANEELRPL  360
YPSTGSGLPS PRASSTVSAS TMDMASVLNM LPGSPSAAQH SFTPPISPSG NGGMPHSSMG  420
WPQQNIPALN LPGSSIQLSR LRSSLNARDI PSEQLSMLHE FEMQRQLSGD MHSPRFMNHS  480
ARPKTLTPSN LEELFSAEVA SPRFSDQLNV SSVLSPSHKS ALLNQLQNNK QSMLSPIKTN  540
LMSSPKNVEQ HSLLQQASSP RAGEPISPMN ARLKQQLHSR SLSSRDFGSS LPRDLMPTDS  600
GSPLSPWSNW DQTHGSKVDW SVQSDELGRL RKSHSLANNP NREADISWAQ QMLKDSASPR  660
NGNRALNMNG VRPLTQGGSS VNPHHSDSRE SDILESWLEQ LQLDR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1535s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2271450.0AK227145.1 Arabidopsis thaliana mRNA for zinc finger transcription factor -like protein, complete cds, clone: RAFL09-83-N23.
GenBankAL3530130.0AL353013.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project).
GenBankAY0997610.0AY099761.1 Arabidopsis thaliana zinc finger transcription factor-like protein (At5g12850) mRNA, complete cds.
GenBankAY1288910.0AY128891.1 Arabidopsis thaliana zinc finger transcription factor-like protein (At5g12850) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286367.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLR0H3J50.0R0H3J5_9BRAS; Uncharacterized protein
STRINGCagra.1535s0020.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain