PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.15158s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 401aa MW: 44914.6 Da PI: 9.0057 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64 | 2.3e-20 | 57 | 146 | 4 | 95 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 vl++ +lk + l+lp +f++++++k ++s +++l+de+ rsW + l+++k s+++++++GWk+F+++ng +eg +++Fkl+++ + ++ Cagra.15158s0006.1.p 57 VLVTDANLKADSLYLPQDFTSSNDLK-RKSCKIVLKDEEERSWAMDLRFNKVSDTCYISRGWKHFCDENGKNEGSVFTFKLMNNGD-TP 143 57788899999************988.6788**************************************************98544.45 PP EEE CS B3 93 vvk 95 +++ Cagra.15158s0006.1.p 144 LLS 146 655 PP | |||||||
2 | B3 | 60.7 | 2.4e-19 | 178 | 270 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f++ ++++d+lks+r++lp +f++e+g++ +++++tl ++g +W v+l r +sgr+ l+kG k+F kangLk g++++ +l++ ++ Cagra.15158s0006.1.p 178 FVTLTLTNDSLKSSRVYLPLPFVRENGMN--NPRMVTLLGKDGIRWAVNL-LRESSGRMSLGKGMKDFSKANGLKIGESFTMELKW-EN 262 7788899*******************999..5669***************.799999***************************99.77 PP E..EEEEE CS B3 90 felvvkvf 97 +++v+++f Cagra.15158s0006.1.p 263 ATPVLSLF 270 77888876 PP | |||||||
3 | B3 | 59.2 | 7.1e-19 | 280 | 373 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f++ ++++d+l+++rl lp +f++e++++k++ t+tl ++g +W +l + ++gr+ l+kGW+eF+ angL+ g +++++ ++ ++ Cagra.15158s0006.1.p 280 FVTLTLTHDSLNNNRLGLPLSFMRENNMNKPG--TMTLLGKDGTKWIANL-LQESRGRMSLGKGWREFAIANGLEIGVSFTLESIW-ED 364 7788899*******************999766..8***************.7999999*************************999.88 PP E..EEEEE- CS B3 90 felvvkvfr 98 +++++++f+ Cagra.15158s0006.1.p 365 ATPMLSLFS 373 889998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.2E-20 | 46 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-18 | 52 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.48 | 54 | 151 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-22 | 55 | 151 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.40E-16 | 55 | 149 | No hit | No description |
Pfam | PF02362 | 9.6E-19 | 57 | 144 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.6E-19 | 168 | 267 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-19 | 174 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.78E-17 | 177 | 271 | No hit | No description |
SMART | SM01019 | 1.9E-26 | 178 | 273 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-18 | 178 | 270 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.015 | 178 | 273 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-18 | 275 | 367 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-19 | 278 | 371 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.58E-16 | 280 | 373 | No hit | No description |
SMART | SM01019 | 2.0E-26 | 280 | 375 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-19 | 280 | 373 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.846 | 280 | 375 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MCYTGNNISK KRNHQTEEGV AHQDNNTVLG RGKKVRTNKS EFKAGSSSSD DDNSFFVLVT 60 DANLKADSLY LPQDFTSSND LKRKSCKIVL KDEEERSWAM DLRFNKVSDT CYISRGWKHF 120 CDENGKNEGS VFTFKLMNNG DTPLLSVLPI KSDNGRTQGD KNSSQSYRDS TSPNNNRFVT 180 LTLTNDSLKS SRVYLPLPFV RENGMNNPRM VTLLGKDGIR WAVNLLRESS GRMSLGKGMK 240 DFSKANGLKI GESFTMELKW ENATPVLSLF CKEYRIPNKF VTLTLTHDSL NNNRLGLPLS 300 FMRENNMNKP GTMTLLGKDG TKWIANLLQE SRGRMSLGKG WREFAIANGL EIGVSFTLES 360 IWEDATPMLS LFSIVESTSD KRQQGECCSN ASEEEKSIST * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.15158s0006.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023639414.1 | 0.0 | B3 domain-containing protein REM12-like isoform X1 | ||||
Swissprot | P0CAP4 | 1e-104 | REM12_ARATH; B3 domain-containing protein REM12 | ||||
TrEMBL | A0A1J3JLQ3 | 1e-179 | A0A1J3JLQ3_NOCCA; B3 domain-containing protein REM12 | ||||
STRING | Cagra.15158s0006.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7828 | 16 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24680.1 | 1e-103 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.15158s0006.1.p |