PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1508s0138.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 432aa    MW: 47023.7 Da    PI: 5.5317
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1508s0138.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31217275259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Cagra.1508s0138.1.p 217 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 275
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381533.3E-2621431No hitNo description
Gene3DG3DSA:2.20.25.807.5E-31210277IPR003657WRKY domain
PROSITE profilePS5081132.879211277IPR003657WRKY domain
SuperFamilySSF1182903.4E-26214277IPR003657WRKY domain
SMARTSM007746.3E-38216276IPR003657WRKY domain
PfamPF031067.5E-26218275IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MCSVSELLDM DSFQGDLTDV VRGIGGHVLS PETPPQNIWP LPLPHPPPSP SDLHVNPFGD  60
PFVSMNDPLL QELNAVTNSS YFSTVGDNNN NNSNNGFLVP KVFEEDHIKS QCSIFPRIRI  120
SHSNNIIHDS SPCNSPAMSA HAVAAAAAAS PRGIINVDTN SPRNCLLVDG NTFSSQIQIS  180
SPRNLGLKRR KSQAKKVVCI PAPAAMNSRS SGEVVPSDLW AWRKYGQKPI KGSPFPRGYY  240
RCSSSKGCSA RKQVERSRTD PNMLVITYTS EHNHPWPIQR NALAGSTRSS SSSSNPNSSK  300
SSNTNVNATT SSIGSHNTTY LPSSTTHPPP LSVSSVKDER GDEMELENVE DDDDNQIAPY  360
RPELHDHQHQ PDDFFADLEE LEGDSLSMLL SQGCAGDGKD KKMVSDGISD FFCWSGDNNN  420
NNYDDQDSRS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25191277279Disease resistance protein RRS1
5w3x_D2e-25191277279Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1508s0138.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2283430.0AK228343.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-76-G23.
GenBankBT0064680.0BT006468.1 Arabidopsis thaliana At1g30650 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307568.10.0probable WRKY transcription factor 14
SwissprotQ9SA800.0WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLR0GXD50.0R0GXD5_9BRAS; Uncharacterized protein
STRINGCagra.1508s0138.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.10.0WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]