PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1418s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 146aa MW: 16848.2 Da PI: 5.1095 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.1 | 3.3e-12 | 47 | 93 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k+ rr ++NRe+A+rsR++Kk++ eeL+e+v L N++Lk++l + Cagra.1418s0004.1.p 47 KKRRRTISNRESAKRSRLKKKKRFEELTEEVNRLNLRNQELKNRLAN 93 899***************************************77754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.9E-11 | 43 | 114 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.76 | 45 | 94 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 1.1E-8 | 45 | 93 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.4E-9 | 45 | 108 | No hit | No description |
SuperFamily | SSF57959 | 8.04E-9 | 47 | 95 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 50 | 65 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MFSTNMEPVH ICFDDAMITG DELNDILAFL QSDESDNPSE VVPVDEKKRR RTISNRESAK 60 RSRLKKKKRF EELTEEVNRL NLRNQELKNR LANVVSCGNE ISNENNRLKT ESVCLEIRLL 120 ELYRFLVAIQ SPISTTVTYI TELEI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 68 | RRRTISNRESAKRSRLKKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1418s0004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301725.1 | 1e-100 | basic leucine zipper 4 | ||||
Swissprot | Q9LQ65 | 4e-78 | BZIP4_ARATH; Basic leucine zipper 4 | ||||
TrEMBL | R0ID76 | 9e-99 | R0ID76_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1418s0004.1.p | 1e-100 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12232 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59530.1 | 1e-69 | basic leucine-zipper 4 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1418s0004.1.p |
Publications ? help Back to Top | |||
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