PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1383s0021.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 686aa MW: 76146.7 Da PI: 7.2288

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1383s0021.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.6	1.2e-28	414	464	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e++i+le+l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Cagra.1383s0021.1.p 414 EHDITLETLRQHFAGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKIKKV 464 789**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	4.3E-4	205	327	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.268	400	484	IPR003035	RWP-RK domain
Pfam	PF02042	6.6E-26	417	464	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	7.0E-19	588	675	No hit	No description
SuperFamily	SSF54277	3.92E-19	590	677	No hit	No description
PROSITE profile	PS51745	22.663	591	676	IPR000270	PB1 domain
SMART	SM00666	1.0E-21	591	676	IPR000270	PB1 domain
CDD	cd06407	3.82E-37	592	675	No hit	No description
Pfam	PF00564	1.1E-15	592	675	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006107	Biological Process	oxaloacetate metabolic process
GO:0006108	Biological Process	malate metabolic process
GO:0005515	Molecular Function	protein binding
GO:0050152	Molecular Function	omega-amidase activity

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
MEEISNNSGV VDFPENFMDE FLWEEQCWEE DALSSPAGFK ERVTCAMGHL QEVMGERELL 60 IQLWVPVERR SGRVLRTEDQ PYSLNPFSQS QSQSLALYRD ASAGYSFAAE LGSDQLVGLP 120 GRVFLRRMPE WTPDVRFFTS EEYPRIGYAR MYKVRASLAL PLFQGASGNC VAVMEMVTTR 180 RSLEQASQLH TICHALQAFD LRTSQTSIVP ASLKLHTEVA SVLQGICSSH GLPLAITWGH 240 QDDSSSLSAI TSACYAADQD SRCFLAACSE HHLLGGQGIA GRAFATKKQC FATDVAIFSK 300 WSHPLSHYAR MLDLHAALAV PLLTRGNRTV QFVLEFFFPR DCLDIQTQRL TLASQLNIHF 360 QSSPHLMVDD QLAEEVRDTA TPLTDEDPKG KQHVSLSFSS SSSLESRKRK TKAEHDITLE 420 TLRQHFAGSL KDAAKNIGVC PTTLKRICRQ HGISRWPSRK IKKVGHSLRK LQVVIDSVEG 480 VQGSLHLASF YSSFPQLQSS STSSFPLINP TQTIHVPPKS PPSSSGSQSS SGSSTCCSSE 540 EQQLGGFQKP ALSHPQVLPL SILHEDQRPA RVTSSLPPLP SATAPRKAKE GMKVKAMFRD 600 SMLRMCLQPH SCLADLRREI AKRFGMDDVL TSNFVLKYMD DDQEWVLLTC EADLEECIQV 660 YKSSLEKTIR ILVHHPLSLS LSPLL*

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

MEEISNNSGV VDFPENFMDE FLWEEQCWEE DALSSPAGFK ERVTCAMGHL QEVMGERELL  60
IQLWVPVERR SGRVLRTEDQ PYSLNPFSQS QSQSLALYRD ASAGYSFAAE LGSDQLVGLP  120
GRVFLRRMPE WTPDVRFFTS EEYPRIGYAR MYKVRASLAL PLFQGASGNC VAVMEMVTTR  180
RSLEQASQLH TICHALQAFD LRTSQTSIVP ASLKLHTEVA SVLQGICSSH GLPLAITWGH  240
QDDSSSLSAI TSACYAADQD SRCFLAACSE HHLLGGQGIA GRAFATKKQC FATDVAIFSK  300
WSHPLSHYAR MLDLHAALAV PLLTRGNRTV QFVLEFFFPR DCLDIQTQRL TLASQLNIHF  360
QSSPHLMVDD QLAEEVRDTA TPLTDEDPKG KQHVSLSFSS SSSLESRKRK TKAEHDITLE  420
TLRQHFAGSL KDAAKNIGVC PTTLKRICRQ HGISRWPSRK IKKVGHSLRK LQVVIDSVEG  480
VQGSLHLASF YSSFPQLQSS STSSFPLINP TQTIHVPPKS PPSSSGSQSS SGSSTCCSSE  540
EQQLGGFQKP ALSHPQVLPL SILHEDQRPA RVTSSLPPLP SATAPRKAKE GMKVKAMFRD  600
SMLRMCLQPH SCLADLRREI AKRFGMDDVL TSNFVLKYMD DDQEWVLLTC EADLEECIQV  660
YKSSLEKTIR ILVHHPLSLS LSPLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	405	410	SRKRKT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1383s0021.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrate. {ECO:0000269\|PubMed:15375205}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC069558	0.0	AC069558.5 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome IV, complete sequence.
GenBank	AL035538	0.0	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL035539	0.0	AL035539.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA project).
GenBank	AL161593	0.0	AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006285049.1	0.0	protein NLP3
Refseq	XP_023634611.1	0.0	protein NLP3
Swissprot	Q9SVF1	0.0	NLP3_ARATH; Protein NLP3
TrEMBL	R0F7T3	0.0	R0F7T3_9BRAS; Uncharacterized protein
STRING	Cagra.1383s0021.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15287	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Cagra.1383s0021.1.p

Publications ? help Back to Top
Doidy J, et al. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". BMC Genomics, 2016. 17: p. 92 [PMID:26843062]