PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.13833s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family FAR1
Protein Properties Length: 687aa    MW: 78837.8 Da    PI: 6.3783
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.13833s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.55.5e-2474165190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 
                           ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+ kl ++ke     ++w+v+++++ Hn
  Cagra.13833s0001.1.p  74 EYYSTFARKSGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDGKLYLTKEVvggVSHWYVSQFSNVHN 161
                           69********************8888.********************************************988889************ PP

                  FAR1  87 Hela 90 
                           Hel 
  Cagra.13833s0001.1.p 162 HELL 165
                           **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-2274165IPR004330FAR1 DNA binding domain
PfamPF105512.8E-22297390IPR018289MULE transposase domain
PROSITE profilePS509669.767556604IPR007527Zinc finger, SWIM-type
PfamPF044341.9E-8576603IPR007527Zinc finger, SWIM-type
SMARTSM005753.3E-7579606IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MAMKPLNNIW IRRQQCPCGD WKCYIRFEGD ESITKSELES SSTTTSNTVS SLYDNTVFMP  60
YVGQIFRTDD EAFEYYSTFA RKSGFSIRKA RSTESQNLGV YRRDFVCYRS GFNQPRKKAN  120
VEHPRERKSV RCGCDGKLYL TKEVVGGVSH WYVSQFSNVH NHELLEDDQV RLLPAYRKIK  180
QDDQDRILLL SKAGFPVNRI VKLLELEKGV QAGQLPFIEK DVRNFVRACK KSVQENDAFL  240
SEKRDSDTLE LLESCKVLAE RDMEFGYDCT SDENQKVENL AWAYGDCVRA YSLFGDVVVF  300
DTTYRSIPYG LLLGVFFGID NNGKAILLGC VLLQDESCHS FTWALQTFIR FMRGRHPQTI  360
LTDIDTGLKD AIAREMPNTN HVVFMWHIVS KLASWFSQTL GSHYDEFRAG FEMLCRAGNV  420
DEFEQQWNLL VTRFGLVPDR HAALLYSCRA SWSPCYIREH FVAQTMTPDF NLSIESFLKR  480
IVSGPTCMQL LLEEVSAAAC LAKQIPPRFT YSSLKTCMPM EDHAREILTP FAFSILQNEM  540
VLSVQYAVSE MANGPYIVHH FKKMEGECCV IWNPENEEIQ CSCKEFEHSG ILCRHILRVL  600
TVKNCFHIPE QYFLLRWRQD SPHVAAENQN GQGIGDDCAQ TFHSLTETLL TESMISKDRL  660
DYANQELSLL IDRVRNAPPA NCLYQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.13833s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankT26D30.0AF262043.1 Arabidopsis thaliana BAC T26D3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637270.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLR0FDR20.0R0FDR2_9BRAS; Uncharacterized protein
STRINGCagra.13833s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]