PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.13498s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 247aa    MW: 28306.6 Da    PI: 6.4202
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.13498s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-13195242148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                           +g+W + Ed +l + v+q+ g   W++Ia+ +  gRt+kqc++rw+++l
  Cagra.13498s0003.1.p 195 KGKWAKSEDMKLNQMVEQYDGIvKWTSIAKNLK-GRTGKQCRERWHNHL 242
                           79******************88**********9.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.438190246IPR017930Myb domain
SuperFamilySSF466895.31E-15190246IPR009057Homeodomain-like
SMARTSM007178.2E-12194244IPR001005SANT/Myb domain
PfamPF002493.1E-12195242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-19196247IPR009057Homeodomain-like
CDDcd001676.39E-13197242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
LFIDDASYIP FYNENLGQSS LNGLYLPPDL TDISNHHQLN HIPSTPPQTQ DSFNQNLLNT  60
QNHLVFNSPS YGIPSDYSFL NIDTYEESMN NITNNNNISA NPKGIFENIY DLQGRTLWDE  120
NVHNVEFTKS VCVPALDQMM GEPQSFDIPV PEDIKNTTSD IMNQGEGQKM VRTHQKKNKK  180
IVETSNHSKE TNIIKGKWAK SEDMKLNQMV EQYDGIVKWT SIAKNLKGRT GKQCRERWHN  240
HLRPGIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-16192247458B-MYB
1gvd_A4e-16193244151MYB PROTO-ONCOGENE PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.13498s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285855.20.0transcription factor MYB115
TrEMBLA0A178UAQ05e-73A0A178UAQ0_ARATH; MYB22
STRINGCagra.13498s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1791069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40430.11e-33myb domain protein 22