PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.12529s0001.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 564aa MW: 62062.7 Da PI: 4.6692 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 116.2 | 3.3e-36 | 6 | 133 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 G rF+Pt eel+++yLk+k gk+ ++e+i e++i+++ P+ Lp + +++++ ewyfFs+ +++++k+ +r+t sgyWk+tgk+ Cagra.12529s0001.2.p 6 IGSRFSPTGEELINDYLKNKNLGKTWLVHEAIGEINILSYIPKLLPdlAVIRSKDPEWYFFSPIVYTNSKKKEMKRITGSGYWKTTGKN 94 699**********************999999**************96447788888********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +k+ ++glkktL++y+g+ p+g+ t Wvmhey++ Cagra.12529s0001.2.p 95 RIIRDKSCVEIGLKKTLMYYTGKVPNGVWTPWVMHEYHI 133 *****9999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.113 | 4 | 151 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-39 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-20 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0031965 | Cellular Component | nuclear membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 564 aa Download sequence Send to blast |
MVKDLIGSRF SPTGEELIND YLKNKNLGKT WLVHEAIGEI NILSYIPKLL PDLAVIRSKD 60 PEWYFFSPIV YTNSKKKEMK RITGSGYWKT TGKNRIIRDK SCVEIGLKKT LMYYTGKVPN 120 GVWTPWVMHE YHITSLPHLQ INYVICQVKY KGKAKDISYG NNLTESSHSL DFDSNTAIAM 180 NSAPEPADSY VICNVCGKGG KEVVNISNGD SSSEPSPPSL VSDSNTIRLT SIIPPVVEQP 240 CQGSLYGLSE NDLILPMNEQ MGGSDPNSIN NSPYVQLQAP FSLQENDELL SGLPQNLTHT 300 SYGNNMTEPS HSLVFDSNTA MASNRAPEPA IQVEQASGNN FVGMSLDDLI DPNEDLSEWD 360 EHYDTETFFS DETNNTNTSL QPQAPHLSPS DNEFIDGLMH VCQRQVKDLF TLSMTENRNN 420 HTATKPLSGT IPDYSSDSDS DAESISATSY PSTSSPVGSS NGCLSSCSST DSCNDLQPSA 480 ESSTGEYQLI QRTVPSKQEV KQETPKVIDV SIKKTKKKGW FITEEAMERN GMTPLFIYLM 540 MIGLILLLAL IGIIISALLN VKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-23 | 7 | 133 | 20 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-23 | 7 | 133 | 20 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-23 | 7 | 133 | 20 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-23 | 7 | 133 | 20 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-23 | 7 | 133 | 23 | 145 | NAC domain-containing protein 19 |
3swm_B | 3e-23 | 7 | 133 | 23 | 145 | NAC domain-containing protein 19 |
3swm_C | 3e-23 | 7 | 133 | 23 | 145 | NAC domain-containing protein 19 |
3swm_D | 3e-23 | 7 | 133 | 23 | 145 | NAC domain-containing protein 19 |
3swp_A | 3e-23 | 7 | 133 | 23 | 145 | NAC domain-containing protein 19 |
3swp_B | 3e-23 | 7 | 133 | 23 | 145 | NAC domain-containing protein 19 |
3swp_C | 3e-23 | 7 | 133 | 23 | 145 | NAC domain-containing protein 19 |
3swp_D | 3e-23 | 7 | 133 | 23 | 145 | NAC domain-containing protein 19 |
4dul_A | 3e-23 | 7 | 133 | 20 | 142 | NAC domain-containing protein 19 |
4dul_B | 3e-23 | 7 | 133 | 20 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00425 | DAP | Transfer from AT4G01540 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.12529s0001.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023637095.1 | 0.0 | NAC domain-containing protein 69 isoform X2 | ||||
TrEMBL | R0H9B7 | 0.0 | R0H9B7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.12529s0001.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01540.1 | 2e-88 | NAC with transmembrane motif1 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.12529s0001.2.p |