PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1225s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 440aa    MW: 48503.6 Da    PI: 7.3258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1225s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44.1e-16249296355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++hn  ErrRR++iN+++ +L+el+P +      K +Ka++Le ++eY+ksLq
  Cagra.1225s0009.1.p 249 EMHNLSERRRREKINEKMKTLQELIPGC-----SKKDKASTLEFVIEYVKSLQ 296
                          58*************************9.....799****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-20244312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.822246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-13249296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-16249300No hitNo description
Gene3DG3DSA:4.10.280.101.4E-20250309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MGEDDIVELL WKSGQVVPSS QTQRSSSHPL PILRGSGSGS GEGNDPLPHP TPSLQHHGQQ  60
SLFIQEDEMA SWLPRPNRQD YFYSSVSSTP ATLPQILASL APPPPSVQDI MTPERPTGQF  120
FSGRRAENFM NFSRLRGNIF TGGIVEAGPS MQVESSATPS SFATESCVIP ATEGTKSSRV  180
LRTFSVPSLG RDEKMASENA GTKPIQTQPA SEISEDRKRK EREETNAEIQ GTEEARDSSV  240
SRKKSRAAEM HNLSERRRRE KINEKMKTLQ ELIPGCSKKD KASTLEFVIE YVKSLQMQVQ  300
MMSMGQGTMP PMMNAGNVQP LMPNMAMRMM DMNRPPFIPF PGTPFPRPPH MEGIGPARPA  360
LAPPYPYDPS RVHLRSPQPN LVSSQPQFPA YMNPYSQFVG LHRMQQPPTP LHSQTTSPVS  420
FSDGSNSKEP DEQDNQSTG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241258RKKSRAAEMHNLSERRRR
2254259ERRRRE
3255260RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1225s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285560.20.0transcription factor bHLH119 isoform X1
SwissprotQ9SVU71e-144BH056_ARATH; Putative transcription factor bHLH056
TrEMBLR0H4M40.0R0H4M4_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1225s0009.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.11e-112bHLH family protein