PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1195s0020.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 599aa    MW: 65724.9 Da    PI: 6.6347
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1195s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.9e-06105125526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ffa+ G C  G +C+F H+
  Cagra.1195s0020.1.p 105 PCKFFAK-GGCFNGVSCRFLHV 125
                          7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0032100126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4105126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479105127IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MSDSDMDIDD DEVEQKVQVH TIGGEPQLLH KPIQAPNPQN GNSFVHSNFE QAKIPSDEQA  60
KFIKEQAFAQ NNGTLSRFPV PGMTPKSFFP AGERNEPEQK RVALPCKFFA KGGCFNGVSC  120
RFLHVKENSN FTSQQQAGNN MAGSSYIQSD LERRISDSKE GVRVSQLSGN GLTPFHTREH  180
ISFVNPPGPQ RVVSSMSFVN PPGSQRVFPF NNEMRFMPSS ENIGRESLKQ MGGADFKDNR  240
SLVINSSNPF TLRSSFVHDN RSSISSYLKT DMVSSGPAWT GSLPSSVTSV LMNEGVSNVG  300
HFEKGSNICG SGSLPTLQEI AVSSEKGSEG NTTSSRKKVS SDDWEPSEPF KASFTIPPYI  360
LPSFDALYDP FTDIENLEDR SLNASFSSKG DHAQKNSLQQ RDGDSGTGPQ ERECKNDDKS  420
SSCSQNQRQE SVARRSLEAH GVVEGVATSV VDQNDTTTPS KEISSAAAAE NRVALKRSKP  480
AGHDSWHRSD GSSYKKTLKA DEIDGEVRSD AEIKVMRQFR TAVVETVKEM LKPLWREGRL  540
TKEVHNMIVK KAAEKVVSGA VECHQVPTDT ESVEQYLGFN ATKMVKLVEG YVQKYGKP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269|PubMed:16291783, ECO:0000269|PubMed:21282526}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1195s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293825.20.0protein FRIGIDA-ESSENTIAL 1
SwissprotQ84VG70.0FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBLR0HRT60.0R0HRT6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006293825.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134681521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.10.0C3H family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]