PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.11654s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 239aa    MW: 27809.1 Da    PI: 10.0087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.11654s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-1087136155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r+r h   Er RR++ ++++  L +llP a     +K++K +i+ekAv+ I +Lq
  Cagra.11654s0002.1.p  87 RCRRHMLKERTRREKQKQCYLALHSLLPFA-----TKNDKNSIVEKAVDEIGKLQ 136
                           6788999***********************.....9***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1279148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.56E-1084137No hitNo description
PROSITE profilePS5088813.05286135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-887136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-790149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-692141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDQFFVDSSV CQEEDNLWDL IITDDISGYV DKSVSVINTS AFRPYVKGTE HRLVSSSSKV  60
NVKKRMVNLL RMNWEKKKSA VAPEKERCRR HMLKERTRRE KQKQCYLALH SLLPFATKND  120
KNSIVEKAVD EIGKLQRIKK ELERRIKVVE AKSANDDDMS FTKVRFSLQE PFSGLDSMLE  180
VLRCLKSMGT KLKTVHASFS PHEFSTTMNI QTQIRGEEVE KKVERRLQEN EWKFLFLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.11654s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281612.11e-165transcription factor bHLH92
SwissprotQ9FIX51e-123BH092_ARATH; Transcription factor bHLH92
TrEMBLR0GQA21e-164R0GQA2_9BRAS; Uncharacterized protein
STRINGCagra.11654s0002.1.p1e-176(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-109bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]