PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1157s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 360aa    MW: 40734.7 Da    PI: 7.5386
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1157s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.81.8e-421122392133
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaa 91 
                          a+k+drhski+T++g+RdRR+Rls+++a+rfFdLqd+LGfdk+sktieWL+ ++k++ik+l ++ + s+    +++++s+a+  +++k +
  Cagra.1157s0001.1.p 112 AKKRDRHSKICTAQGPRDRRMRLSLQIARRFFDLQDMLGFDKASKTIEWLFSKSKASIKQLKESVAASE--GGEDDEHSQAN--EKAKDE 197
                          789*************************************************************44444..32233333333..223334 PP

                  TCP  92 ksaakskksqksaasalnlakesrakarararertrekmrik 133
                            + k +k+++++ + + ++ke r++ar+rarert  km+++
  Cagra.1157s0001.1.p 198 ILKVKVSKRRTKTMESSCKMKELRERARKRARERTITKMKMR 239
                          444466667777777788899*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-35113238IPR005333Transcription factor, TCP
PROSITE profilePS5136936.3114172IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.667218237IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MFPSLDTNGY VLFDTFSPRQ TTILPPFTTH IQSPSSNHHF PSPSFSFSPD FLENADESFL  60
LSQFLFQEQD AAANVVESPR KVCKKLEKKK HNDKCVEEDT TSSEKVSERR MAKKRDRHSK  120
ICTAQGPRDR RMRLSLQIAR RFFDLQDMLG FDKASKTIEW LFSKSKASIK QLKESVAASE  180
GGEDDEHSQA NEKAKDEILK VKVSKRRTKT MESSCKMKEL RERARKRARE RTITKMKMRL  240
SGLVDTSETI SDPQQATREI KISNGAQVLD GKNQEQEWST NVNMVEYQMD SVSIIEKFLG  300
LTSESSSSSI FGDSEESNTN LSSIRGVVAP SEHNTASIAS VDEETNPISS FSLYDYLCY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220230RERARKRARER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1157s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302415.20.0transcription factor TCP12 isoform X1
SwissprotA0AQW41e-171TCP12_ARATH; Transcription factor TCP12
TrEMBLR0IEY80.0R0IEY8_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1157s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-156TCP domain protein 12