PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1111s0013.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 321aa    MW: 35465.8 Da    PI: 8.3145
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1111s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.72.2e-14236260226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ktelC+ +++tG C+yG+ C+FaHg
  Cagra.1111s0013.1.p 236 KTELCNKWQETGACPYGNHCQFAHG 260
                          9***********************8 PP
2zf-CCCH19.81.4e-06273298126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykte Cr  +++  C+yG rC+F H+
  Cagra.1111s0013.1.p 273 YKTEVCRMVLAGDNCPYGHRCHFRHS 298
                          9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-17229267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-10231266IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-8234261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356234262IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-11236260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-9268303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-13268301IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5272299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272272300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MTNEIAPFSY AGVVGIKKPQ GDSSCGGGVV SSSLFSDQLY KSSRNIMQQQ RQDMVNREAL  60
CYTRLHEASL EAEALRLENT ELRSMNRHLK TELNSLIRSS IQSRLDYDRV PLRMLSNLSI  120
GGNDADEVEN QNNQNRTVKR DDVSDESPTS VMENEDMNRS SLPKSISVRS SGYSKASQGG  180
VGAAQSGKSR GAVPKTGTCG GQLSTTQKVY VRGGGKKEDQ EEEEIEVEVY NQGMTKTELC  240
NKWQETGACP YGNHCQFAHG IKELRPVIRH PRYKTEVCRM VLAGDNCPYG HRCHFRHSLS  300
EQEKLVAAGL KPKSSLKLLT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-22236301570Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1111s0013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0260770.0BT026077.1 Arabidopsis thaliana At1g68200 mRNA, complete cds.
GenBankDQ0565140.0DQ056514.1 Arabidopsis thaliana zinc finger (CCCH-type) family protein (At1g68200) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302558.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-164C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLR0GI950.0R0GI95_9BRAS; Uncharacterized protein
STRINGCagra.1111s0013.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-150C3H family protein