PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1085s0083.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Protein Properties

Length: 295aa MW: 33542.9 Da PI: 10.7611

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1085s0083.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.8	4e-18	19	110	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 ffkv + +++++ +p +fa++++ ++ + +++++ +g sWevk+ +k+++ ++ ++GW++Fv +n L ++f++F+++g++ Cagra.1085s0083.1.p 19 FFKVVNSVAISSENMRAIPHDFARKFSDNELLG-KMKIRVHWGSSWEVKI--SKNPRFyFMEKSGWEKFVTDNALGRNEFLTFTHKGKMH 105 7777755556666888********8886655.9***********..**555569******************999888 PP E..EEEE CS B3 90 felvvkv 96 f v + Cagra.1085s0083.1.p 106 F--SVNI 110 8..5554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.4E-19	14	112	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.73E-17	14	111	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.05E-16	18	110	No hit	No description
Pfam	PF02362	2.0E-16	19	110	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.901	19	114	IPR003340	B3 DNA binding domain
SMART	SM01019	7.6E-18	19	114	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.96E-14	198	292	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	8.839	202	294	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.0E-10	202	291	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.28E-7	205	290	No hit	No description
SMART	SM01019	1.9E-11	205	294	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MACNPEFLRC YEERKQESFF KVVNSVAISS ENMRAIPHDF ARKFSDNELL GKMKIRVHWG 60 SSWEVKISKN PRFYFMEKSG WEKFVTDNAL GRNEFLTFTH KGKMHFSVNI MKQIGKEMLQ 120 PPQTRAFFAS SSRFKTEQGV KVVSSDLNSR GPRTAPESNG EGMCRRKLNF EKKKAEESQN 180 SKRTERVVGI QRDFAGTSSS SVAGFSIVIT KSYLTSLALP VSVVNFMPRV KSVVKIHHPN 240 GKKLWKVVFL VTRRGRLFSG GWRSLCMDYP VALGDTCKFT LINPHELLLV VTKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1085s0083.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254597	1e-163	AC254597.1 Capsella rubella clone CAP08-M05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006288334.1	0.0	B3 domain-containing protein REM23
Swissprot	Q9LXE1	1e-136	REM23_ARATH; B3 domain-containing protein REM23
TrEMBL	R0FG33	0.0	R0FG33_9BRAS; Uncharacterized protein
STRING	Cagra.1085s0083.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09780.1	1e-138	B3 family protein

Link Out ? help Back to Top
Phytozome	Cagra.1085s0083.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]