PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G09780.1 | ||||||||
Common Name | F17I14.30, REM23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 308aa MW: 35622.8 Da PI: 10.3886 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.6 | 3.6e-21 | 19 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffkvl++sd+++++ +p +f+ +++ + e s +++++ ++g+sW+vk+ +k+++ ++ ++GW++Fv +n L + +f++F+++g+++f +vk+f AT5G09780.1 19 FFKVLKRSDMSSEDTRAIPYDFVINFSDN-ELSGDMKFRVQWGNSWKVKI--SKNPRFyFMEKSGWEKFVIDNALGDHEFLTFTHKGQMSF--TVKIF 111 99*********************888766.5777****************..******555569*********************999999..9*999 PP -S CS B3 98 rk 99 +k AT5G09780.1 112 NK 113 87 PP | |||||||
2 | B3 | 39.7 | 9e-13 | 220 | 297 | 3 | 86 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 k+++++++ ks l +pk+f +++ k e++ +++ +++g ++W+v + k ++ ++++GWk+ +k+ + gD++ F+l+ AT5G09780.1 220 KIFISKSYIKS--LAIPKPFG-NYMPK--EKTRVKIHHPDGeKTWKVVF--VVKERGQIFSGGWKRLCKEYPVVFGDTCKFTLIT 297 66666666665..89*****9.66533..4457*******99*******..777777899**********************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-20 | 14 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-21 | 15 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.23E-20 | 18 | 112 | No hit | No description |
PROSITE profile | PS50863 | 13.31 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-20 | 19 | 113 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.8E-25 | 19 | 114 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-14 | 213 | 305 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.869 | 216 | 308 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.77E-7 | 219 | 296 | No hit | No description |
SMART | SM01019 | 1.0E-14 | 219 | 308 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-10 | 220 | 297 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-11 | 223 | 302 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009046 | anatomy | flower | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MASNPDFLWC KEERKQESFF KVLKRSDMSS EDTRAIPYDF VINFSDNELS GDMKFRVQWG 60 NSWKVKISKN PRFYFMEKSG WEKFVIDNAL GDHEFLTFTH KGQMSFTVKI FNKDGKEMMQ 120 PPQSRASFAS SSRVKTEQDV KREEEVLVSS DSRSRGPTTA AETNRGGSYK RKLNFGKKKA 180 EETQTYKRTE RTQNSKRTER VVSKERVYAG EPSSSVAGFK IFISKSYIKS LAIPKPFGNY 240 MPKEKTRVKI HHPDGEKTWK VVFVVKERGQ IFSGGWKRLC KEYPVVFGDT CKFTLITPLE 300 LLLVVSKP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18416089 | 0.0 | ||||
Genevisible | 250491_at | 0.0 | ||||
Expression Atlas | AT5G09780 | - | ||||
AtGenExpress | AT5G09780 | - | ||||
ATTED-II | AT5G09780 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G09780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G09780 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ056675 | 0.0 | DQ056675.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g09780) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_196540.1 | 0.0 | Transcriptional factor B3 family protein | ||||
Swissprot | Q9LXE1 | 0.0 | REM23_ARATH; B3 domain-containing protein REM23 | ||||
TrEMBL | A0A178UQ85 | 0.0 | A0A178UQ85_ARATH; Uncharacterized protein | ||||
STRING | AT5G09780.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Link Out ? help Back to Top | |
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Phytozome | AT5G09780.1 |
Entrez Gene | 830838 |
iHOP | AT5G09780 |
wikigenes | AT5G09780 |
Publications ? help Back to Top | |||
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