PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.10726s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GeBP | ||||||||
Protein Properties | Length: 367aa MW: 40150.2 Da PI: 8.2807 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 107.9 | 7.6e-34 | 137 | 237 | 1 | 98 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehd 85 k+fqrl+se Dei+lLqG++df++++g +p++d daf+++vkk i+f+++ksq+v+K++rLKkKf++ vkk ks++e++f k+ d Cagra.10726s0005.1.p 137 KMFQRLFSEADEIALLQGVLDFTSTKG-DPYEDSDAFCSYVKKLIDFDATKSQIVTKLQRLKKKFTNTVKKslkkGKSEDEIQFPKDID 224 58*************************.9***************************************99988888999********** PP DUF573 86 qkifelskkiWgs 98 qk+fel++kiWgs Cagra.10726s0005.1.p 225 QKSFELARKIWGS 237 ***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.7E-27 | 139 | 236 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MAPKKAEVID NPPVASSSEE EESGSSGEES ESSAELSKKD DSSKKPESES EGESESESDS 60 EHEPEPAKTN KQPVVAKAKA EASGSAVAVP ESSTAKRPSK EAEPETNKKL KTSETEHVKV 120 PKTNDEAKKI SGEDAKKMFQ RLFSEADEIA LLQGVLDFTS TKGDPYEDSD AFCSYVKKLI 180 DFDATKSQIV TKLQRLKKKF TNTVKKSLKK GKSEDEIQFP KDIDQKSFEL ARKIWGSNGV 240 MTSKSRKKVG GTPSSKAPKE MKLVAHSTPK KPAEAKRPEK TEAKAVNTGL SIGREIALFF 300 NAENSSSCCL DESTVTAVWK KVADGAEKTK VEEKWKKLKA KQVELCLQRT ELVNETAKMI 360 FKAYES* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.10726s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006283973.1 | 0.0 | GLABROUS1 enhancer-binding protein-like isoform X1 | ||||
Swissprot | Q9SB42 | 1e-161 | STKLS_ARATH; GLABROUS1 enhancer-binding protein-like | ||||
TrEMBL | R0F5W3 | 0.0 | R0F5W3_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.10726s0005.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9272 | 17 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 1e-135 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Cagra.10726s0005.1.p |