PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1043s0015.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 192aa MW: 21478.8 Da PI: 6.5565 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34 | 6.2e-11 | 59 | 104 | 5 | 50 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + +r NReA r++R++Kka+++ Le++vk L++ N+ L +l+ Cagra.1043s0015.1.p 59 SNKKRSCGNREAVRKYREKKKARTAYLEDEVKRLQTLNEHLHRKLQ 104 67899999*********************************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.3E-12 | 51 | 122 | No hit | No description |
SMART | SM00338 | 2.4E-7 | 54 | 122 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 2.4E-15 | 55 | 105 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.025 | 57 | 123 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.44E-8 | 58 | 106 | No hit | No description |
CDD | cd14686 | 2.90E-11 | 67 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MNMDEEEVQV WDGASRGCSH THSCNPPGPD DASHSHTCFH THTHLIIPDQ QENDHSDSSN 60 KKRSCGNREA VRKYREKKKA RTAYLEDEVK RLQTLNEHLH RKLQSQATVE TEVIRLRTLL 120 VEMQGKIDGE LGGFSNQKHC FGSGFVFKED GCSVATSNII CEAARVECEE GQTLHDAAMH 180 SFVAHSPPFS H* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of salt stress response. Functions as a negative transcriptional regulator of salt stress acclimation response by regulating cation homeostasis (PubMed:18703123, PubMed:19248824). Regulates negatively the expression of genes contributing to ion and osmotic homeostasis during salt stress, such as the Na(+) transporter HKT1, the Na(+)/H(+) antiporter SOS1, the aquaporin PIP2-1 and the glutamine synthetase GLN1-3. In addition, targets genes with functions in plant growth and development, such as argonaute 4 (AGO4) and cyclophilin 19 (CYP19) (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1043s0015.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18703123, PubMed:19248824). Induced by osmotic stress (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117629 | 1e-163 | AK117629.1 Arabidopsis thaliana At3g51960 mRNA for putative bZip transcription factor Atbzip24, complete cds, clone: RAFL17-28-M01. | |||
GenBank | BT005422 | 1e-163 | BT005422.1 Arabidopsis thaliana clone U50385 putative bZIP family transcription factor (At3g51960) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010515641.1 | 1e-127 | PREDICTED: basic leucine zipper 24 isoform X2 | ||||
Swissprot | Q8GTS1 | 1e-105 | BZP24_ARATH; Basic leucine zipper 24 | ||||
TrEMBL | R0FRK3 | 1e-124 | R0FRK3_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1043s0015.1.p | 1e-142 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15172 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51960.1 | 2e-95 | basic leucine zipper 24 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1043s0015.1.p |