PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1036s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | E2F/DP | ||||||||
Protein Properties | Length: 353aa MW: 40278.7 Da PI: 9.045 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 67.9 | 1.2e-21 | 11 | 76 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rkeksL++l ++fl+l+++ + + l+e+a L v +rRRiYD++N+Le+++l++++ kn+++w+g Cagra.1036s0060.1.p 11 RKEKSLGVLVSNFLRLYNRDVGDLIGLDEAAGYL---GV--ERRRIYDVVNILESIGLVARRGKNQYSWRG 76 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 82.9 | 2.7e-26 | 136 | 215 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek....kekneirwkg 71 +ke+sL++l+q+f+kl+ +s+++ +tl+e++k+L+++ ++++k+RR+YDi+NV++++nliek ++k ++rw g Cagra.1036s0060.1.p 136 KKERSLWHLSQNFVKLFLCSDDDLITLDEATKALLHDsqdplNMRTKVRRLYDIANVFSSMNLIEKthtpEKKTAYRWLG 215 699***************************************************************9999999*****87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.5E-22 | 9 | 77 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.8E-24 | 11 | 76 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.5E-15 | 11 | 74 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 3.7E-18 | 12 | 76 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.1E-22 | 134 | 216 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 6.3E-30 | 136 | 215 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.9E-19 | 137 | 215 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.44E-13 | 139 | 216 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MDSLGLQPYC RKEKSLGVLV SNFLRLYNRD VGDLIGLDEA AGYLGVERRR IYDVVNILES 60 IGLVARRGKN QYSWRGFGEV PRALTELKRQ GMGEKFGIIP YVTKSEMVLY EKEREESLES 120 TPEDQENSPS PKLDSKKERS LWHLSQNFVK LFLCSDDDLI TLDEATKALL HDSQDPLNMR 180 TKVRRLYDIA NVFSSMNLIE KTHTPEKKTA YRWLGARAIS VNRFLTASAR LCDRNEPKKR 240 AFGTELTNFN AKRNKAECSK DRKHYGNQNT SSVIKEEPYD EKPDVKSFAF GTSTPAGTSG 300 MNNIGNNIRP RLGFIETISS LYQPQYCNPA LFGLLAHYKE TFEACQEEFR RK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 6e-35 | 7 | 208 | 1 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent regulation of gene expression. Binds specifically the E2 recognition site as a monomer without interacting with DP proteins. May be up-regulating E2FA and down-regulating repressors of cell cycle progression. Promotes cell proliferation and represses cell elongation. Regulated by proteolysis via a ubiquitin-proteasome pathway. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:19937368}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00511 | DAP | Transfer from AT5G14960 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1036s0060.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated posttranscroptionally by auxin. {ECO:0000269|PubMed:19937368}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288061.1 | 0.0 | E2F transcription factor-like E2FD | ||||
Swissprot | Q9LFQ9 | 0.0 | E2FD_ARATH; E2F transcription factor-like E2FD | ||||
TrEMBL | R0GVN7 | 0.0 | R0GVN7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1036s0060.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6003 | 25 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14960.1 | 0.0 | DP-E2F-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1036s0060.1.p |