PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1013s0027.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 290aa    MW: 31992.6 Da    PI: 8.3347
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1013s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.26e-11556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT eE+e l+ +++++G+g Wk I r         +R+  ++k++w+++
  Cagra.1013s0027.1.p  5 KLKWTGEEEEALLAGIAKHGPGKWKNILRDPEfadqlIHRSNIDLKDKWRNL 56
                         689*********************************999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.062161IPR017930Myb domain
SuperFamilySSF466892.15E-15360IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-13457IPR009057Homeodomain-like
SMARTSM007176.8E-8459IPR001005SANT/Myb domain
PfamPF002493.3E-7556IPR001005SANT/Myb domain
CDDcd116601.88E-20756No hitNo description
SuperFamilySSF467856.53E-14122205IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.3E-15123188IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.4E-9124204IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.279125193IPR005818Linker histone H1/H5, domain H15
PfamPF005385.2E-7127186IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGNQKLKWTG EEEEALLAGI AKHGPGKWKN ILRDPEFADQ LIHRSNIDLK DKWRNLSVPP  60
GNQGSNYKAR PIKVKEEGVT PSPVTIVDNI NPPPIVKPII PAVPSIQRND LINDESCNIV  120
VDTKNAPRYD GMIFEALSSL ADANGSDVSS IFHFIEPRHE VPPNFRRILS SRLRRLAAQS  180
KLVKLQNFYK IPDPSGTRTP APKPKETHVK PRQLNNQASA ISQQMIEEAS ITAACKVVEA  240
ENKIDIARVA GEEFAKITKL AEGSEHLLVI ANEMHEQCSR GETVVLACV*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1013s0027.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3729251e-105AF372925.1 Arabidopsis thaliana At1g72740/F28P22_7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302535.20.0telomere repeat-binding factor 5 isoform X2
SwissprotF4IEY41e-142TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLR0IFA60.0R0IFA6_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1013s0027.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-131MYB_related family protein
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]