PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1004s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 502aa    MW: 56332.2 Da    PI: 4.9655
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1004s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.4e-07145165526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+ff++   C++G++C+ +Hg
  Cagra.1004s0006.1.p 145 MCKFFME-QRCRFGSSCRSSHG 165
                          6******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.342140167IPR000571Zinc finger, CCCH-type
SMARTSM003560.001140166IPR000571Zinc finger, CCCH-type
SMARTSM004431.0E-14301347IPR000467G-patch domain
PROSITE profilePS5017413.587303349IPR000467G-patch domain
PfamPF015852.2E-14303346IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MANEEDKALE DLLDIQIKEQ KESLFAINEA LASDPSNPEL LSVHEELLEA IKEAEEGLFQ  60
LKRARLLQEA DIVLNGLIHD AGGVEAEDKT EMEPEKIEEK KDLDGSKCRF RHTDGRWYNG  120
RIIGFEGSDT AKISFLTPTS ESMTMCKFFM EQRCRFGSSC RSSHGLDVPL SSLKNYEQTE  180
WKESIVGSTI WAVSGSKYNI WRKAELESWD DELQVGRVVF RDDGSSAKLG SNSMALSEYA  240
QMTDDDGEEE EEDEEGSASD SEESVSSDCD EESPQGIGFL ENPNQPRGIQ TDTALFAKWE  300
NHTRGIASKM MASMGYREGM GLGASGQGIL NPVLVKVLPA KRSLDYALEH IKNGEGKCEK  360
QKKKRSRGGK RKRGKKFAEA ARAAKQEEES KPDMFSLINE RINYTRQEKV KSIESGKMKQ  420
NNGPIDRKDL VAYEDEVKDL KSELWKLEQM VNRNKKDKVV SEAATRRLKE IRKALASTLA  480
AQAAASIAVE SKEKEKRWLK F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360375QKKKRSRGGKRKRGKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1004s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296432.10.0zinc finger CCCH domain-containing protein 22
SwissprotQ9SK490.0C3H22_ARATH; Zinc finger CCCH domain-containing protein 22
TrEMBLR0HV880.0R0HV88_9BRAS; Uncharacterized protein
STRINGCagra.1004s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94371016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.10.0C3H family protein